Current Environment: Production

Keith Ligon | Medical Services

Programs & Services

Languages

  • English

Keith Ligon | Education

Graduate School

PhD

University of Texas Medical School at Houston/MD Anderson Cancer Center

1996, Houston, TX

Medical School

University of Texas Medical School at Houston

1997, Houston, TX

Residency

Anatomic Pathology

Brigham and Women's Hospital

1999, Boston, MA

Fellowship

Neuropathology

Brigham and Women's Hospital/Boston Children's Hospital

2001, Boston, MA

Keith Ligon | Certifications

  • American Board of Pathology (Anatomic)
  • American Board of Pathology (Neuropathology)

Keith Ligon | Publications

  1. Glioblastoma-instructed astrocytes suppress tumour-specific T cell immunity. Nature. 2025 May 21. View Glioblastoma-instructed astrocytes suppress tumour-specific T cell immunity. Abstract

  2. High-throughput single-cell density measurements enable dynamic profiling of immune cell and drug response from patient samples. Nat Biomed Eng. 2025 May 20. View High-throughput single-cell density measurements enable dynamic profiling of immune cell and drug response from patient samples. Abstract

  3. Canonical amplifications and CDKN2A/B loss refine IDH1/2-mutant astrocytoma prognosis. Neuro Oncol. 2025 May 15; 27(4):993-1003. View Canonical amplifications and CDKN2A/B loss refine IDH1/2-mutant astrocytoma prognosis. Abstract

  4. Deciphering the longitudinal trajectories of glioblastoma ecosystems by integrative single-cell genomics. Nat Genet. 2025 May; 57(5):1168-1178. View Deciphering the longitudinal trajectories of glioblastoma ecosystems by integrative single-cell genomics. Abstract

  5. The multilayered transcriptional architecture of glioblastoma ecosystems. Nat Genet. 2025 May; 57(5):1155-1167. View The multilayered transcriptional architecture of glioblastoma ecosystems. Abstract

  6. Dissecting the immune landscape in pediatric high-grade glioma reveals cell state changes under therapeutic pressure. Cell Rep Med. 2025 May 20; 6(5):102095. View Dissecting the immune landscape in pediatric high-grade glioma reveals cell state changes under therapeutic pressure. Abstract

  7. Investigative needle core biopsies support multimodal deep-data generation in glioblastoma. Nat Commun. 2025 Apr 28; 16(1):3957. View Investigative needle core biopsies support multimodal deep-data generation in glioblastoma. Abstract

  8. Phase I Study of Adavosertib with Radiotherapy and Temozolomide in Newly Diagnosed Glioblastoma and Intratumoral Drug Levels in Recurrent Glioblastoma. Clin Cancer Res. 2025 Mar 17; 31(6):983-992. View Phase I Study of Adavosertib with Radiotherapy and Temozolomide in Newly Diagnosed Glioblastoma and Intratumoral Drug Levels in Recurrent Glioblastoma. Abstract

  9. Effective targeting of PDGFRA-altered high-grade glioma with avapritinib. Cancer Cell. 2025 Apr 14; 43(4):740-756.e8. View Effective targeting of PDGFRA-altered high-grade glioma with avapritinib. Abstract

  10. A window-of-opportunity trial reveals mechanisms of response and resistance to navtemadlin in patients with recurrent glioblastoma. Sci Transl Med. 2025 Feb 19; 17(786):eadn6274. View A window-of-opportunity trial reveals mechanisms of response and resistance to navtemadlin in patients with recurrent glioblastoma. Abstract

  11. Genomic Profiling Reveals SMARCA4 Mutations Are Associated with Shorter Overall and Intracranial Progression-Free Survival in Patients with Melanoma Brain Metastases. Clin Cancer Res. 2025 Feb 17; 31(4):719-732. View Genomic Profiling Reveals SMARCA4 Mutations Are Associated with Shorter Overall and Intracranial Progression-Free Survival in Patients with Melanoma Brain Metastases. Abstract

  12. Re-Irradiation Plus Pembrolizumab: A Phase II Study for Patients with Recurrent Glioblastoma. Clin Cancer Res. 2025 Jan 17; 31(2):316-327. View Re-Irradiation Plus Pembrolizumab: A Phase II Study for Patients with Recurrent Glioblastoma. Abstract

  13. Increased SOX10, p16, and Cyclin D1 Immunoreactivity Differentiates MAP Kinase-activated Low-grade Gliomas From Piloid Gliosis. Am J Surg Pathol. 2025 Apr 01; 49(4):347-352. View Increased SOX10, p16, and Cyclin D1 Immunoreactivity Differentiates MAP Kinase-activated Low-grade Gliomas From Piloid Gliosis. Abstract

  14. Contemporary prognostic signatures and refined risk stratification of gliomas: An analysis of 4400 tumors. Neuro Oncol. 2025 Jan 12; 27(1):195-208. View Contemporary prognostic signatures and refined risk stratification of gliomas: An analysis of 4400 tumors. Abstract

  15. Multimodal deep learning improves recurrence risk prediction in pediatric low-grade gliomas. Neuro Oncol. 2025 Jan 12; 27(1):277-290. View Multimodal deep learning improves recurrence risk prediction in pediatric low-grade gliomas. Abstract

  16. Neoadjuvant anti-PD1 immunotherapy for surgically accessible recurrent glioblastoma: clinical and molecular outcomes of a stage 2 single-arm expansion cohort. Nat Commun. 2024 12 30; 15(1):10757. View Neoadjuvant anti-PD1 immunotherapy for surgically accessible recurrent glioblastoma: clinical and molecular outcomes of a stage 2 single-arm expansion cohort. Abstract

  17. Epidermal growth factor receptor and Ink4a/Arf: Convergent mechanisms governing terminal differentiation and transformation along the neural stem cell to astrocyte axis. Cancer Cell. 2024 Dec 09; 42(12):2124. View Epidermal growth factor receptor and Ink4a/Arf: Convergent mechanisms governing terminal differentiation and transformation along the neural stem cell to astrocyte axis. Abstract

  18. A comparative analysis of IDH-mutant glioma in pediatric, young adult, and older adult patients. Neuro Oncol. 2024 Dec 05; 26(12):2364-2376. View A comparative analysis of IDH-mutant glioma in pediatric, young adult, and older adult patients. Abstract

  19. Pilot Trial of Perampanel on Peritumoral Hyperexcitability in Newly Diagnosed High-grade Glioma. Clin Cancer Res. 2024 Dec 02; 30(23):5365-5373. View Pilot Trial of Perampanel on Peritumoral Hyperexcitability in Newly Diagnosed High-grade Glioma. Abstract

  20. Phase 1b/2 study of orally administered pexidartinib in combination with radiation therapy and temozolomide in patients with newly diagnosed glioblastoma. Neurooncol Adv. 2024 Jan-Dec; 6(1):vdae202. View Phase 1b/2 study of orally administered pexidartinib in combination with radiation therapy and temozolomide in patients with newly diagnosed glioblastoma. Abstract

  21. A pathology foundation model for cancer diagnosis and prognosis prediction. Nature. 2024 Oct; 634(8035):970-978. View A pathology foundation model for cancer diagnosis and prognosis prediction. Abstract

  22. GABAergic neuronal lineage development determines clinically actionable targets in diffuse hemispheric glioma, H3G34-mutant. Cancer Cell. 2024 Aug 27. View GABAergic neuronal lineage development determines clinically actionable targets in diffuse hemispheric glioma, H3G34-mutant. Abstract

  23. Author Correction: Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer. Nat Commun. 2024 Aug 22; 15(1):7218. View Author Correction: Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer. Abstract

  24. Surgical window of opportunity trial reveals mechanisms of response and resistance to navtemadlin (KRT-232) in patients with recurrent glioblastoma. medRxiv. 2024 Aug 14. View Surgical window of opportunity trial reveals mechanisms of response and resistance to navtemadlin (KRT-232) in patients with recurrent glioblastoma. Abstract

  25. Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer. Nat Commun. 2024 Jul 11; 15(1):5837. View Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer. Abstract

  26. Velcrin molecular glues induce apoptosis in glioblastomas with high PDE3A and SLFN12 expression. Neurooncol Adv. 2024 Jan-Dec; 6(1):vdae115. View Velcrin molecular glues induce apoptosis in glioblastomas with high PDE3A and SLFN12 expression. Abstract

  27. Noninvasive Molecular Subtyping of Pediatric Low-Grade Glioma with Self-Supervised Transfer Learning. Radiol Artif Intell. 2024 May; 6(3):e230333. View Noninvasive Molecular Subtyping of Pediatric Low-Grade Glioma with Self-Supervised Transfer Learning. Abstract

  28. Measuring single-cell density with high throughput enables dynamic profiling of immune cell and drug response from patient samples. bioRxiv. 2024 Apr 28. View Measuring single-cell density with high throughput enables dynamic profiling of immune cell and drug response from patient samples. Abstract

  29. Pilot trial of perampanel on peritumoral hyperexcitability and clinical outcomes in newly diagnosed high-grade glioma. medRxiv. 2024 Apr 18. View Pilot trial of perampanel on peritumoral hyperexcitability and clinical outcomes in newly diagnosed high-grade glioma. Abstract

  30. A heterogeneous pharmaco-transcriptomic landscape induced by targeting a single oncogenic kinase. bioRxiv. 2024 Apr 10. View A heterogeneous pharmaco-transcriptomic landscape induced by targeting a single oncogenic kinase. Abstract

  31. Targeting TRIP13 in favorable histology Wilms tumor with nuclear export inhibitors synergizes with doxorubicin. Commun Biol. 2024 04 08; 7(1):426. View Targeting TRIP13 in favorable histology Wilms tumor with nuclear export inhibitors synergizes with doxorubicin. Abstract

  32. Mutant IDH inhibitors induce lineage differentiation in IDH-mutant oligodendroglioma. Cancer Cell. 2024 May 13; 42(5):904-914.e9. View Mutant IDH inhibitors induce lineage differentiation in IDH-mutant oligodendroglioma. Abstract

  33. Clinical and Genomic Predictors of Adverse Events in Newly Diagnosed Glioblastoma. Clin Cancer Res. 2024 Apr 01; 30(7):1327-1337. View Clinical and Genomic Predictors of Adverse Events in Newly Diagnosed Glioblastoma. Abstract

  34. Systematic characterization of antibody-drug conjugate targets in central nervous system tumors. Neuro Oncol. 2024 03 04; 26(3):458-472. View Systematic characterization of antibody-drug conjugate targets in central nervous system tumors. Abstract

  35. Author Correction: Liquid biopsy epigenomic profiling for cancer subtyping. Nat Med. 2024 Mar; 30(3):907. View Author Correction: Liquid biopsy epigenomic profiling for cancer subtyping. Abstract

  36. Glioma genetic profiles associated with electrophysiologic hyperexcitability. Neuro Oncol. 2024 02 02; 26(2):323-334. View Glioma genetic profiles associated with electrophysiologic hyperexcitability. Abstract

  37. Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma. Mol Cell. 2024 Jan 18; 84(2):261-276.e18. View Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma. Abstract

  38. Investigative needle core biopsies for multi-omics in Glioblastoma. medRxiv. 2023 Dec 31. View Investigative needle core biopsies for multi-omics in Glioblastoma. Abstract

  39. Insulin feedback is a targetable resistance mechanism of PI3K inhibition in glioblastoma. Neuro Oncol. 2023 12 08; 25(12):2165-2176. View Insulin feedback is a targetable resistance mechanism of PI3K inhibition in glioblastoma. Abstract

  40. Noninvasive molecular subtyping of pediatric low-grade glioma with self-supervised transfer learning. medRxiv. 2023 Nov 22. View Noninvasive molecular subtyping of pediatric low-grade glioma with self-supervised transfer learning. Abstract

  41. 2D and 3D multiplexed subcellular profiling of nuclear instability in human cancer. bioRxiv. 2023 Nov 11. View 2D and 3D multiplexed subcellular profiling of nuclear instability in human cancer. Abstract

  42. Liquid biopsy epigenomic profiling for cancer subtyping. Nat Med. 2023 Nov; 29(11):2737-2741. View Liquid biopsy epigenomic profiling for cancer subtyping. Abstract

  43. Clinical trial links oncolytic immunoactivation to survival in glioblastoma. Nature. 2023 Nov; 623(7985):157-166. View Clinical trial links oncolytic immunoactivation to survival in glioblastoma. Abstract

  44. Single-cell profiling and zebrafish avatars reveal LGALS1 as immunomodulating target in glioblastoma. EMBO Mol Med. 2023 11 08; 15(11):e18144. View Single-cell profiling and zebrafish avatars reveal LGALS1 as immunomodulating target in glioblastoma. Abstract

  45. Inaugural Results of the Individualized Screening Trial of Innovative Glioblastoma Therapy: A Phase II Platform Trial for Newly Diagnosed Glioblastoma Using Bayesian Adaptive Randomization. J Clin Oncol. 2023 Dec 20; 41(36):5524-5535. View Inaugural Results of the Individualized Screening Trial of Innovative Glioblastoma Therapy: A Phase II Platform Trial for Newly Diagnosed Glioblastoma Using Bayesian Adaptive Randomization. Abstract

  46. Intratumoral drug-releasing microdevices allow in situ high-throughput pharmaco phenotyping in patients with gliomas. Sci Transl Med. 2023 09 06; 15(712):eadi0069. View Intratumoral drug-releasing microdevices allow in situ high-throughput pharmaco phenotyping in patients with gliomas. Abstract

  47. ALK Amplification and Rearrangements Are Recurrent Targetable Events in Congenital and Adult Glioblastoma. Clin Cancer Res. 2023 07 14; 29(14):2651-2667. View ALK Amplification and Rearrangements Are Recurrent Targetable Events in Congenital and Adult Glioblastoma. Abstract

  48. Evaluating hematologic parameters in newly diagnosed and recurrent glioblastoma: Prognostic utility and clinical trial implications of myelosuppression. Neurooncol Adv. 2023 Jan-Dec; 5(1):vdad083. View Evaluating hematologic parameters in newly diagnosed and recurrent glioblastoma: Prognostic utility and clinical trial implications of myelosuppression. Abstract

  49. Machine learning for cryosection pathology predicts the 2021 WHO classification of glioma. Med. 2023 08 11; 4(8):526-540.e4. View Machine learning for cryosection pathology predicts the 2021 WHO classification of glioma. Abstract

  50. Telomerase inhibition is an effective therapeutic strategy in TERT promoter-mutant glioblastoma models with low tumor volume. Neuro Oncol. 2023 07 06; 25(7):1275-1285. View Telomerase inhibition is an effective therapeutic strategy in TERT promoter-mutant glioblastoma models with low tumor volume. Abstract

  51. High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers. Nat Cancer. 2023 07; 4(7):1036-1052. View High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers. Abstract

  52. (R)-2-Hydroxyglutarate Inhibits KDM5 Histone Lysine Demethylases to Drive Transformation in IDH-Mutant Cancers. Cancer Discov. 2023 06 02; 13(6):1478-1497. View (R)-2-Hydroxyglutarate Inhibits KDM5 Histone Lysine Demethylases to Drive Transformation in IDH-Mutant Cancers. Abstract

  53. Dynamic BH3 profiling identifies pro-apoptotic drug combinations for the treatment of malignant pleural mesothelioma. Nat Commun. 2023 05 20; 14(1):2897. View Dynamic BH3 profiling identifies pro-apoptotic drug combinations for the treatment of malignant pleural mesothelioma. Abstract

  54. Single-cell molecular profiling using ex vivo functional readouts fuels precision oncology in glioblastoma. Cell Mol Life Sci. 2023 May 12; 80(6):147. View Single-cell molecular profiling using ex vivo functional readouts fuels precision oncology in glioblastoma. Abstract

  55. Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma. bioRxiv. 2023 May 06. View Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma. Abstract

  56. Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation. Cells. 2023 03 21; 12(6). View Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation. Abstract

  57. Glioma genetic profiles associated with electrophysiologic hyperexcitability. medRxiv. 2023 Feb 24. View Glioma genetic profiles associated with electrophysiologic hyperexcitability. Abstract

  58. Cancer-associated fibroblasts are the main contributors to epithelial-to-mesenchymal signatures in the tumor microenvironment. Sci Rep. 2023 02 21; 13(1):3051. View Cancer-associated fibroblasts are the main contributors to epithelial-to-mesenchymal signatures in the tumor microenvironment. Abstract

  59. Multi-institutional study of the frequency, genomic landscape, and outcome of IDH-mutant glioma in pediatrics. Neuro Oncol. 2023 01 05; 25(1):199-210. View Multi-institutional study of the frequency, genomic landscape, and outcome of IDH-mutant glioma in pediatrics. Abstract

  60. Isocitrate dehydrogenase (IDH) mutant gliomas: A Society for Neuro-Oncology (SNO) consensus review on diagnosis, management, and future directions. Neuro Oncol. 2023 01 05; 25(1):4-25. View Isocitrate dehydrogenase (IDH) mutant gliomas: A Society for Neuro-Oncology (SNO) consensus review on diagnosis, management, and future directions. Abstract

  61. Integrated response analysis of pediatric low-grade gliomas during and after targeted therapy treatment. Neurooncol Adv. 2023 Jan-Dec; 5(1):vdac182. View Integrated response analysis of pediatric low-grade gliomas during and after targeted therapy treatment. Abstract

  62. The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location. Nat Genet. 2022 12; 54(12):1881-1894. View The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location. Abstract

  63. K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas. Nat Genet. 2022 12; 54(12):1865-1880. View K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas. Abstract

  64. BAF Complex Maintains Glioma Stem Cells in Pediatric H3K27M Glioma. Cancer Discov. 2022 12 02; 12(12):2880-2905. View BAF Complex Maintains Glioma Stem Cells in Pediatric H3K27M Glioma. Abstract

  65. Improved survival among females and association with lymphopenia in patients with newly diagnosed glioblastoma. Neuro Oncol. 2022 11 02; 24(11):2005-2007. View Improved survival among females and association with lymphopenia in patients with newly diagnosed glioblastoma. Abstract

  66. VRK1 as a synthetic lethal target in VRK2 promoter-methylated cancers of the nervous system. JCI Insight. 2022 10 10; 7(19). View VRK1 as a synthetic lethal target in VRK2 promoter-methylated cancers of the nervous system. Abstract

  67. PD-L1 and PD-1 expression in pediatric central nervous system germ cell tumors. Mod Pathol. 2022 12; 35(12):1770-1774. View PD-L1 and PD-1 expression in pediatric central nervous system germ cell tumors. Abstract

  68. FOXR2 Is an Epigenetically Regulated Pan-Cancer Oncogene That Activates ETS Transcriptional Circuits. Cancer Res. 2022 09 02; 82(17):2980-3001. View FOXR2 Is an Epigenetically Regulated Pan-Cancer Oncogene That Activates ETS Transcriptional Circuits. Abstract

  69. De novo pyrimidine synthesis is a targetable vulnerability in IDH mutant glioma. Cancer Cell. 2022 09 12; 40(9):939-956.e16. View De novo pyrimidine synthesis is a targetable vulnerability in IDH mutant glioma. Abstract

  70. Single cell spatial analysis reveals the topology of immunomodulatory purinergic signaling in glioblastoma. Nat Commun. 2022 08 16; 13(1):4814. View Single cell spatial analysis reveals the topology of immunomodulatory purinergic signaling in glioblastoma. Abstract

  71. Generation of patient-derived models from a metastatic pediatric diffuse leptomeningeal glioneuronal tumor with KIAA1549::BRAF fusion. Acta Neuropathol. 2022 10; 144(4):793-797. View Generation of patient-derived models from a metastatic pediatric diffuse leptomeningeal glioneuronal tumor with KIAA1549::BRAF fusion. Abstract

  72. Correction to: Early EEG hyperexcitability is associated with decreased survival in newly diagnosed IDH-wildtype glioma. J Neurooncol. 2022 Aug; 159(1):219. View Correction to: Early EEG hyperexcitability is associated with decreased survival in newly diagnosed IDH-wildtype glioma. Abstract

  73. Liquid biopsy detection of genomic alterations in pediatric brain tumors from cell-free DNA in peripheral blood, CSF, and urine. Neuro Oncol. 2022 08 01; 24(8):1352-1363. View Liquid biopsy detection of genomic alterations in pediatric brain tumors from cell-free DNA in peripheral blood, CSF, and urine. Abstract

  74. Structural variants shape driver combinations and outcomes in pediatric high-grade glioma. Nat Cancer. 2022 08; 3(8):994-1011. View Structural variants shape driver combinations and outcomes in pediatric high-grade glioma. Abstract

  75. Clinical utility of targeted next-generation sequencing assay in IDH-wildtype glioblastoma for therapy decision-making. Neuro Oncol. 2022 07 01; 24(7):1140-1149. View Clinical utility of targeted next-generation sequencing assay in IDH-wildtype glioblastoma for therapy decision-making. Abstract

  76. Early EEG hyperexcitability is associated with decreased survival in newly diagnosed IDH-wildtype glioma. J Neurooncol. 2022 Aug; 159(1):211-218. View Early EEG hyperexcitability is associated with decreased survival in newly diagnosed IDH-wildtype glioma. Abstract

  77. A molecularly integrated grade for meningioma. Neuro Oncol. 2022 05 04; 24(5):796-808. View A molecularly integrated grade for meningioma. Abstract

  78. Survival outcomes associated with MGMT promoter methylation and temozolomide in gliosarcoma patients. J Neurooncol. 2022 May; 158(1):111-116. View Survival outcomes associated with MGMT promoter methylation and temozolomide in gliosarcoma patients. Abstract

  79. Synthetic extracellular matrices and astrocytes provide a supportive microenvironment for the cultivation and investigation of primary pediatric gliomas. Neurooncol Adv. 2022 Jan-Dec; 4(1):vdac049. View Synthetic extracellular matrices and astrocytes provide a supportive microenvironment for the cultivation and investigation of primary pediatric gliomas. Abstract

  80. DICER1 mutations in primary central nervous system tumors: new insights into histologies, mutations, and prognosis. J Neurooncol. 2022 May; 157(3):499-510. View DICER1 mutations in primary central nervous system tumors: new insights into histologies, mutations, and prognosis. Abstract

  81. PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation. Nat Commun. 2022 02 01; 13(1):604. View PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation. Abstract

  82. The Alliance AMBUSH Trial: Rationale and Design. Cancers (Basel). 2022 Jan 14; 14(2). View The Alliance AMBUSH Trial: Rationale and Design. Abstract

  83. Multimodal platform for assessing drug distribution and response in clinical trials. Neuro Oncol. 2022 01 05; 24(1):64-77. View Multimodal platform for assessing drug distribution and response in clinical trials. Abstract

  84. Activity of PD-1 blockade with nivolumab among patients with recurrent atypical/anaplastic meningioma: phase II trial results. Neuro Oncol. 2022 01 05; 24(1):101-113. View Activity of PD-1 blockade with nivolumab among patients with recurrent atypical/anaplastic meningioma: phase II trial results. Abstract

  85. Mutational burden and immune recognition of gliomas. Curr Opin Oncol. 2021 11 01; 33(6):626-634. View Mutational burden and immune recognition of gliomas. Abstract

  86. Functional drug susceptibility testing using single-cell mass predicts treatment outcome in patient-derived cancer neurosphere models. Cell Rep. 2021 10 05; 37(1):109788. View Functional drug susceptibility testing using single-cell mass predicts treatment outcome in patient-derived cancer neurosphere models. Abstract

  87. Molecular Alterations in Pediatric Low-Grade Gliomas That Led to Death. J Neuropathol Exp Neurol. 2021 11 19; 80(11):1052–1059. View Molecular Alterations in Pediatric Low-Grade Gliomas That Led to Death. Abstract

  88. Quantification of aneuploidy in targeted sequencing data using ASCETS. Bioinformatics. 2021 08 25; 37(16):2461-2463. View Quantification of aneuploidy in targeted sequencing data using ASCETS. Abstract

  89. Rates and Patterns of Clonal Oncogenic Mutations in the Normal Human Brain. Cancer Discov. 2022 01; 12(1):172-185. View Rates and Patterns of Clonal Oncogenic Mutations in the Normal Human Brain. Abstract

  90. Prognostication for meningiomas: H3K27me3 to the rescue? Neuro Oncol. 2021 08 02; 23(8):1218-1219. View Prognostication for meningiomas: H3K27me3 to the rescue? Abstract

  91. Effect of PIK3CA variants on glioma-related epilepsy and response to treatment. Epilepsy Res. 2021 09; 175:106681. View Effect of PIK3CA variants on glioma-related epilepsy and response to treatment. Abstract

  92. IDH-mutant gliomas with additional class-defining molecular events. Mod Pathol. 2021 07; 34(7):1236-1244. View IDH-mutant gliomas with additional class-defining molecular events. Abstract

  93. Inhibitory CD161 receptor identified in glioma-infiltrating T cells by single-cell analysis. Cell. 2021 03 04; 184(5):1281-1298.e26. View Inhibitory CD161 receptor identified in glioma-infiltrating T cells by single-cell analysis. Abstract

  94. Targeting glioblastoma using a novel peptide specific to a deglycosylated isoform of brevican. Adv Ther (Weinh). 2021 Apr; 4(4). View Targeting glioblastoma using a novel peptide specific to a deglycosylated isoform of brevican. Abstract

  95. Socioeconomic Disparities Associated With MGMT Promoter Methylation Testing for Patients With Glioblastoma. JAMA Oncol. 2020 12 01; 6(12):1972-1974. View Socioeconomic Disparities Associated With MGMT Promoter Methylation Testing for Patients With Glioblastoma. Abstract

  96. Histone H3.3G34-Mutant Interneuron Progenitors Co-opt PDGFRA for Gliomagenesis. Cell. 2020 12 10; 183(6):1617-1633.e22. View Histone H3.3G34-Mutant Interneuron Progenitors Co-opt PDGFRA for Gliomagenesis. Abstract

  97. Concurrent Dexamethasone Limits the Clinical Benefit of Immune Checkpoint Blockade in Glioblastoma. Clin Cancer Res. 2021 01 01; 27(1):276-287. View Concurrent Dexamethasone Limits the Clinical Benefit of Immune Checkpoint Blockade in Glioblastoma. Abstract

  98. Loss of histone H3 trimethylation on lysine 27 and nuclear expression of transducin-like enhancer 1 in primary intracranial sarcoma, DICER1-mutant. Histopathology. 2021 Jan; 78(2):265-275. View Loss of histone H3 trimethylation on lysine 27 and nuclear expression of transducin-like enhancer 1 in primary intracranial sarcoma, DICER1-mutant. Abstract

  99. Subependymal giant cell astrocytomas are characterized by mTORC1 hyperactivation, a very low somatic mutation rate, and a unique gene expression profile. Mod Pathol. 2021 02; 34(2):264-279. View Subependymal giant cell astrocytomas are characterized by mTORC1 hyperactivation, a very low somatic mutation rate, and a unique gene expression profile. Abstract

  100. Divergent Roles of PI3K Isoforms in PTEN-Deficient Glioblastomas. Cell Rep. 2020 09 29; 32(13):108196. View Divergent Roles of PI3K Isoforms in PTEN-Deficient Glioblastomas. Abstract

  101. Epigenomic programming in early fetal brain development. Epigenomics. 2020 06; 12(12):1053-1070. View Epigenomic programming in early fetal brain development. Abstract

  102. Molecular and clinicopathologic features of gliomas harboring NTRK fusions. Acta Neuropathol Commun. 2020 07 14; 8(1):107. View Molecular and clinicopathologic features of gliomas harboring NTRK fusions. Abstract

  103. Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma. Cancer Cell. 2020 07 13; 38(1):44-59.e9. View Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma. Abstract

  104. Tumor Interferon Signaling Is Regulated by a lncRNA INCR1 Transcribed from the PD-L1 Locus. Mol Cell. 2020 06 18; 78(6):1207-1223.e8. View Tumor Interferon Signaling Is Regulated by a lncRNA INCR1 Transcribed from the PD-L1 Locus. Abstract

  105. Prediction of Outcomes with a Computational Biology Model in Newly Diagnosed Glioblastoma Patients Treated with Radiation Therapy and Temozolomide. Int J Radiat Oncol Biol Phys. 2020 11 01; 108(3):716-724. View Prediction of Outcomes with a Computational Biology Model in Newly Diagnosed Glioblastoma Patients Treated with Radiation Therapy and Temozolomide. Abstract

  106. MR Imaging Correlates for Molecular and Mutational Analyses in Children with Diffuse Intrinsic Pontine Glioma. AJNR Am J Neuroradiol. 2020 05; 41(5):874-881. View MR Imaging Correlates for Molecular and Mutational Analyses in Children with Diffuse Intrinsic Pontine Glioma. Abstract

  107. Mechanisms and therapeutic implications of hypermutation in gliomas. Nature. 2020 04; 580(7804):517-523. View Mechanisms and therapeutic implications of hypermutation in gliomas. Abstract

  108. WNT-Activated Medulloblastomas With Hybrid Molecular Subtypes. JCO Precis Oncol. 2020; 4. View WNT-Activated Medulloblastomas With Hybrid Molecular Subtypes. Abstract

  109. Correction: BPTF regulates growth of adult and pediatric high-grade glioma through the MYC pathway. Oncogene. 2020 Mar; 39(12):2641. View Correction: BPTF regulates growth of adult and pediatric high-grade glioma through the MYC pathway. Abstract

  110. Early TP53 alterations engage environmental exposures to promote gastric premalignancy in an integrative mouse model. Nat Genet. 2020 02; 52(2):219-230. View Early TP53 alterations engage environmental exposures to promote gastric premalignancy in an integrative mouse model. Abstract

  111. The medical necessity of advanced molecular testing in the diagnosis and treatment of brain tumor patients. Neuro Oncol. 2019 12 17; 21(12):1498-1508. View The medical necessity of advanced molecular testing in the diagnosis and treatment of brain tumor patients. Abstract

  112. A large peptidome dataset improves HLA class I epitope prediction across most of the human population. Nat Biotechnol. 2020 02; 38(2):199-209. View A large peptidome dataset improves HLA class I epitope prediction across most of the human population. Abstract

  113. BPTF regulates growth of adult and pediatric high-grade glioma through the MYC pathway. Oncogene. 2020 03; 39(11):2305-2327. View BPTF regulates growth of adult and pediatric high-grade glioma through the MYC pathway. Abstract

  114. Implementing Patient-Derived Xenografts to Assess the Effectiveness of Cyclin-Dependent Kinase Inhibitors in Glioblastoma. Cancers (Basel). 2019 Dec 12; 11(12). View Implementing Patient-Derived Xenografts to Assess the Effectiveness of Cyclin-Dependent Kinase Inhibitors in Glioblastoma. Abstract

  115. Longitudinal molecular trajectories of diffuse glioma in adults. Nature. 2019 12; 576(7785):112-120. View Longitudinal molecular trajectories of diffuse glioma in adults. Abstract

  116. Increasing value of autopsies in patients with brain tumors in the molecular era. J Neurooncol. 2019 Nov; 145(2):349-355. View Increasing value of autopsies in patients with brain tumors in the molecular era. Abstract

  117. Isomorphic diffuse glioma is a morphologically and molecularly distinct tumour entity with recurrent gene fusions of MYBL1 or MYB and a benign disease course. Acta Neuropathol. 2020 01; 139(1):193-209. View Isomorphic diffuse glioma is a morphologically and molecularly distinct tumour entity with recurrent gene fusions of MYBL1 or MYB and a benign disease course. Abstract

  118. Pineal apoplexy due to pleomorphic variant pineocytoma. Clin Neuropathol. 2019 Sep/Oct; 38(5):253-255. View Pineal apoplexy due to pleomorphic variant pineocytoma. Abstract

  119. Phase II trial of ponatinib in patients with bevacizumab-refractory glioblastoma. Cancer Med. 2019 10; 8(13):5988-5994. View Phase II trial of ponatinib in patients with bevacizumab-refractory glioblastoma. Abstract

  120. Mitogenic and progenitor gene programmes in single pilocytic astrocytoma cells. Nat Commun. 2019 08 19; 10(1):3731. View Mitogenic and progenitor gene programmes in single pilocytic astrocytoma cells. Abstract

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