Explaining how fragile X happens is not very easy simply because of the way it is inherited. To start, let's talk broadly about genes and chromosomes. Genes are the instructions that tell our bodies how to work and are made up of DNA. We inherit two copies of all of our genes: one copy from our mother and one copy from our father. The DNA is packed into larger structures called chromosomes, and each chromosome contains hundreds to thousands of genes. Most people have 23 pairs of chromosomes, for a total of 46 chromosomes. The first 22 pairs are the same in males and females and are called the autosomes. The 23rd pair, called the sex chromosomes, are different in males and females. Females have two "X" chromosomes, and males have one "X" and one "Y" chromosome.
Fragile X is caused by a change in the FMR1 gene on the X chromosome that causes it to not work properly. Everyone has six to 10 genes that don't work the way they should, but this generally does not cause a problem. However, the change in the FMR1 gene does make a difference. This change (also called a mutation) is complex and occurs over many generations.
The FMR1 gene contains a section of repetitive DNA that in most of the population is only 10 to 40 repeats long. In those with FXS, this repeated region has expanded to more than 200 repeats. When a repeat length is greater than 200, it is referred to as a full mutation or expansion. At this size, the FMR1 gene cannot function and the FMR1 protein cannot be produced. It is the inability of cells to make this protein that is responsible for FXS.
In general, every person gets two copies of every gene. This is a little bit different for the FMR1 gene because it is on the "X" chromosome. Because males have only one "X" chromosome, they have only one copy of the FMR1 gene. If they have a full mutation, their one copy of the FMR1 gene is not working, and one sees the signs of FXS. Because females have two "X" chromosomes and two copies of the FMR1 gene, if a girl inherits a full mutation, the other copy of the gene is usually working, so girls with a full mutation are still able to make FMR1 protein. This is why girls usually have fewer signs of fragile X than boys do.
In general, we expect to see the full mutation in every cell of a person with fragile X syndrome. Sometimes an individual with FXS can have what is called mosaicism. There are two kinds of mosaicism in FXS: repeat-size mosaicism and methylation mosaicism. In repeat-size mosaicism, an individual has some cells that have a full mutation and some cells that have a premutation. In methylation mosaicism, all the cells have a full mutation, but the methylation pattern may not be the same in all cells. Some research studies have shown that individuals with repeat size or methylation mosaicism may be less affected than those who do not have mosaicism.