Lab Web Site:  Computational Radiology Laboratory

Research Overview

Simon Warfield's research in the field of medical image analysis has focused on methods for quantitative image analysis through novel segmentation and registration approaches, and in real-time and large data image analysis, enabled by high performance computing technology. Algorithms developed by Dr. Warfield have been applied in several domains, including developing an improved understanding of early brain development, understanding the association between white matter lesions and cognitive dysfunction in multiple sclerosis, and in enhancing navigation and visualization during image guided surgery.

Dr. Warfield founded the Computational Radiology Laboratory (CRL) in 2001. The CRL was formed with the mission of improving our understanding of the structure and function of the brain and other organs of the human body, in order to improve our capacity to diagnose and treat disease. Members of the CRL achieve this by developing novel technologies and computational modeling strategies for understanding and interpreting radiological images. More about Dr. Warfield's research can be found here: http://crl.med.harvard.edu

About Simon Warfield

Simon Warfield received his PhD from the School of Computer Science and Engineering of the University of New South Wales, in Sydney, Australia. He completed his post-doctoral training in medical imaging at Harvard Medical School/Brigham and Women's Hospital, Boston, MA.

He is also Director of the Computational Radiology Laboratory situated in the Department of Radiology at Children's Hospital and Site Co-Director for Boston Children's Hospital in the Harvard CTSC Translational Technologies Imaging Consortium.


Researcher Services

Researcher Areas

  • Medical Image Analysis

Research Departments

Researcher Labs

PUBLICATIONS

Publications powered by Harvard Catalyst Profiles

  1. Benjamin CFA, Dhingra I, Li AX, Blumenfeld H, Alkawadri R, Bickel S, Helmstaedter C, Meletti S, Bronen RA, Warfield SK, Peters JM, Reutens D, Polczynska MM, Hirsch LJ, Spencer DD. Presurgical language fMRI: Technical practices in epilepsy surgical planning. Hum Brain Mapp. 2018 Jul 01. View abstract
  2. Martinot AJ, Abbink P, Afacan O, Prohl AK, Bronson R, Hecht JL, Borducchi EN, Larocca RA, Peterson RL, Rinaldi W, Ferguson M, Didier PJ, Weiss D, Lewis MG, De La Barrera RA, Yang E, Warfield SK, Barouch DH. Fetal Neuropathology in Zika Virus-Infected Pregnant Female Rhesus Monkeys. Cell. 2018 May 17; 173(5):1111-1122.e10. View abstract
  3. Srivastava S, Prohl AK, Scherrer B, Kapur K, Krueger DA, Warfield SK, Sahin M. Cerebellar volume as an imaging marker of development in infants with tuberous sclerosis complex. Neurology. 2018 Apr 24; 90(17):e1493-e1500. View abstract
  4. Benjamin CFA, Li AX, Blumenfeld H, Constable RT, Alkawadri R, Bickel S, Helmstaedter C, Meletti S, Bronen R, Warfield SK, Peters JM, Reutens D, Polczynska M, Spencer DD, Hirsch LJ. Presurgical language fMRI: Clinical practices and patient outcomes in epilepsy surgical planning. Hum Brain Mapp. 2018 Jul; 39(7):2777-2785. View abstract
  5. Monson BB, Eaton-Rosen Z, Kapur K, Liebenthal E, Brownell A, Smyser CD, Rogers CE, Inder TE, Warfield SK, Neil JJ. Differential Rates of Perinatal Maturation of Human Primary and Nonprimary Auditory Cortex. eNeuro. 2018 Jan-Feb; 5(1). View abstract
  6. Baumer FM, Peters JM, Clancy S, Prohl AK, Prabhu SP, Scherrer B, Jansen FE, Braun KPJ, Sahin M, Stamm A, Warfield SK. Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex. Cereb Cortex. 2017 Nov 23. View abstract
  7. Velasco-Annis C, Akhondi-Asl A, Stamm A, Warfield SK. Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL-FIRST. J Neuroimaging. 2018 Mar; 28(2):162-172. View abstract
  8. Kurugol S, Marami B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. Mol Imaging Reconstr Anal Mov Body Organs Stroke Imaging Treat (2017). 2017; 10555:75-85. View abstract
  9. Eaton-Rosen Z, Scherrer B, Melbourne A, Ourselin S, Neil JJ, Warfield SK. Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI. Neuroimage. 2017 Nov 15; 162:65-72. View abstract
  10. Rensonnet G, Scherrer B, Warfield SK, Macq B, Taquet M. Assessing the validity of the approximation of diffusion-weighted-MRI signals from crossing fascicles by sums of signals from single fascicles. Magn Reson Med. 2018 Apr; 79(4):2332-2345. View abstract
  11. Hyde DE, Tomas-Fernandez X, Stone SS, Peters J, Warfield SK. Localization of stereo-electroencephalography signals using a finite difference complete electrode model. Conf Proc IEEE Eng Med Biol Soc. 2017 07; 2017:3600-3603. View abstract
  12. Ferizi U, Scherrer B, Schneider T, Alipoor M, Eufracio O, Fick RHJ, Deriche R, Nilsson M, Loya-Olivas AK, Rivera M, Poot DHJ, Ramirez-Manzanares A, Marroquin JL, Rokem A, Pötter C, Dougherty RF, Sakaie K, Wheeler-Kingshott C, Warfield SK, Witzel T, Wald LL, Raya JG, Alexander DC. Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison. NMR Biomed. 2017 Sep; 30(9). View abstract
  13. Kurugol S, Freiman M, Afacan O, Domachevsky L, Perez-Rossello JM, Callahan MJ, Warfield SK. Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. Med Image Anal. 2017 Jul; 39:124-132. View abstract
  14. Marami B, Mohseni Salehi SS, Afacan O, Scherrer B, Rollins CK, Yang E, Estroff JA, Warfield SK, Gholipour A. Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. Neuroimage. 2017 Aug 01; 156:475-488. View abstract
  15. Tourbier S, Velasco-Annis C, Taimouri V, Hagmann P, Meuli R, Warfield SK, Bach Cuadra M, Gholipour A. Automated template-based brain localization and extraction for fetal brain MRI reconstruction. Neuroimage. 2017 Jul 15; 155:460-472. View abstract
  16. Jacobson SW, Jacobson JL, Molteno CD, Warton CMR, Wintermark P, Hoyme HE, De Jong G, Taylor P, Warton F, Lindinger NM, Carter RC, Dodge NC, Grant E, Warfield SK, Zöllei L, van der Kouwe AJW, Meintjes EM. Heavy Prenatal Alcohol Exposure is Related to Smaller Corpus Callosum in Newborn MRI Scans. Alcohol Clin Exp Res. 2017 May; 41(5):965-975. View abstract
  17. Hesper T, Bulat E, Bixby S, Akhondi-Asl A, Afacan O, Miller P, Bowen G, Warfield S, Kim YJ. Both 3-T dGEMRIC and Acetabular-Femoral T2 Difference May Detect Cartilage Damage at the Chondrolabral Junction. Clin Orthop Relat Res. 2017 Apr; 475(4):1058-1065. View abstract
  18. Gholipour A, Rollins CK, Velasco-Annis C, Ouaalam A, Akhondi-Asl A, Afacan O, Ortinau CM, Clancy S, Limperopoulos C, Yang E, Estroff JA, Warfield SK. A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth. Sci Rep. 2017 03 28; 7(1):476. View abstract
  19. Sánchez Fernández I, Peters JM, Akhondi-Asl A, Klehm J, Warfield SK, Loddenkemper T. Reduced thalamic volume in patients with Electrical Status Epilepticus in Sleep. Epilepsy Res. 2017 02; 130:74-80. View abstract
  20. Jia Y, Gholipour A, He Z, Warfield SK. A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans. IEEE Trans Med Imaging. 2017 05; 36(5):1182-1193. View abstract
  21. Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Prados F, Sudre CH, Jorge Cardoso M, Cawley N, Ciccarelli O, Wheeler-Kingshott CAM, Ourselin S, Catanese L, Deshpande H, Maurel P, Commowick O, Barillot C, Tomas-Fernandez X, Warfield SK, Vaidya S, Chunduru A, Muthuganapathy R, Krishnamurthi G, Jesson A, Arbel T, Maier O, Handels H, Iheme LO, Unay D, Jain S, Sima DM, Smeets D, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL. Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. Neuroimage. 2017 Mar 01; 148:77-102. View abstract
  22. Hedouin R, Commowick O, Bannier E, Scherrer B, Taquet M, Warfield SK, Barillot C. Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. IEEE Trans Med Imaging. 2017 05; 36(5):1106-1115. View abstract
  23. Rollins CK, Asaro LA, Akhondi-Asl A, Kussman BD, Rivkin MJ, Bellinger DC, Warfield SK, Wypij D, Newburger JW, Soul JS. White Matter Volume Predicts Language Development in Congenital Heart Disease. J Pediatr. 2017 Feb; 181:42-48.e2. View abstract
  24. Alexander B, Murray AL, Loh WY, Matthews LG, Adamson C, Beare R, Chen J, Kelly CE, Rees S, Warfield SK, Anderson PJ, Doyle LW, Spittle AJ, Cheong JLY, Seal ML, Thompson DK. A new neonatal cortical and subcortical brain atlas: the Melbourne Children's Regional Infant Brain (M-CRIB) atlas. Neuroimage. 2017 Feb 15; 147:841-851. View abstract
  25. Marami B, Scherrer B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects. Med Image Comput Comput Assist Interv. 2016 Oct; 9902:544-552. View abstract
  26. Marami B, Scherrer B, Afacan O, Erem B, Warfield SK, Gholipour A. Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans Med Imaging. 2016 10; 35(10):2258-2269. View abstract
  27. Chamberland M, Scherrer B, Prabhu SP, Madsen J, Fortin D, Whittingstall K, Descoteaux M, Warfield SK. Active delineation of Meyer's loop using oriented priors through MAGNEtic tractography (MAGNET). Hum Brain Mapp. 2017 01; 38(1):509-527. View abstract
  28. Kinney HC, Poduri AH, Cryan JB, Haynes RL, Teot L, Sleeper LA, Holm IA, Berry GT, Prabhu SP, Warfield SK, Brownstein C, Abram HS, Kruer M, Kemp WL, Hargitai B, Gastrang J, Mena OJ, Haas EA, Dastjerdi R, Armstrong DD, Goldstein RD. Hippocampal Formation Maldevelopment and Sudden Unexpected Death across the Pediatric Age Spectrum. J Neuropathol Exp Neurol. 2016 Oct; 75(10):981-997. View abstract
  29. Afacan O, Erem B, Roby DP, Roth N, Roth A, Prabhu SP, Warfield SK. Evaluation of motion and its effect on brain magnetic resonance image quality in children. Pediatr Radiol. 2016 Nov; 46(12):1728-1735. View abstract
  30. Erem B, Hyde DE, Peters JM, Duffy FH, Warfield SK. Dynamic Electrical Source Imaging (DESI) of Seizures and Interictal Epileptic Discharges Without Ensemble Averaging. IEEE Trans Med Imaging. 2017 01; 36(1):98-110. View abstract
  31. Hyde DE, Dannhauer M, Warfield SK, MacLeod R, Brooks DH. Evaluation of Numerical Techniques for Solving the Current Injection Problem in Biological Tissues. Proc IEEE Int Symp Biomed Imaging. 2016 Apr; 2016:876-880. View abstract
  32. Afacan O, Gholipour A, Mulkern RV, Barnewolt CE, Estroff JA, Connolly SA, Parad RB, Bairdain S, Warfield SK. Fetal lung apparent diffusion coefficient measurement using diffusion-weighted MRI at 3 Tesla: Correlation with gestational age. J Magn Reson Imaging. 2016 Dec; 44(6):1650-1655. View abstract
  33. Erem B, Martinez Orellana R, Hyde DE, Peters JM, Duffy FH, Stovicek P, Warfield SK, MacLeod RS, Tadmor G, Brooks DH. Extensions to a manifold learning framework for time-series analysis on dynamic manifolds in bioelectric signals. Phys Rev E. 2016 04; 93(4):042218. View abstract
  34. Marami B, Scherrer B, Afacan O, Erem B, Warfield S, Gholipour A. Motion-robust diffusion-weighted brain MRI reconstruction through slice-level registration-based motion tracking. IEEE Trans Med Imaging. 2016 Apr 20. View abstract
  35. Kurugol S, Freiman M, Afacan O, Perez-Rossello JM, Callahan MJ, Warfield SK. Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. Med Image Anal. 2016 08; 32:173-83. View abstract
  36. Pier DB, Gholipour A, Afacan O, Velasco-Annis C, Clancy S, Kapur K, Estroff JA, Warfield SK. 3D Super-Resolution Motion-Corrected MRI: Validation of Fetal Posterior Fossa Measurements. J Neuroimaging. 2016 09; 26(5):539-44. View abstract
  37. Bulat E, Bixby SD, Siversson C, Kalish LA, Warfield SK, Kim YJ. Planar dGEMRIC Maps May Aid Imaging Assessment of Cartilage Damage in Femoroacetabular Impingement. Clin Orthop Relat Res. 2016 Feb; 474(2):467-78. View abstract
  38. Gholipour A, Afacan O, Aganj I, Scherrer B, Prabhu SP, Sahin M, Warfield SK. Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI. Med Phys. 2015 Dec; 42(12):6919-32. View abstract
  39. Stamm A, Singh J, Afacan O, Warfield SK. Analytic quantification of bias and variance of coil sensitivity profile estimators for improved image reconstruction in MRI. Med Image Comput Comput Assist Interv. 2015 Oct; 9350:684-691. View abstract
  40. Akhondi-Asl A, Afacan O, Balasubramanian M, Mulkern RV, Warfield SK. Fast myelin water fraction estimation using 2D multislice CPMG. Magn Reson Med. 2016 10; 76(4):1301-13. View abstract
  41. Taquet M, Scherrer B, Boumal N, Peters JM, Macq B, Warfield SK. Improved fidelity of brain microstructure mapping from single-shell diffusion MRI. Med Image Anal. 2015 Dec; 26(1):268-86. View abstract
  42. Peters JM, Prohl AK, Tomas-Fernandez XK, Taquet M, Scherrer B, Prabhu SP, Lidov HG, Singh JM, Jansen FE, Braun KP, Sahin M, Warfield SK, Stamm A. Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging. Neurology. 2015 Nov 03; 85(18):1536-45. View abstract
  43. Scherrer B, Schwartzman A, Taquet M, Sahin M, Prabhu SP, Warfield SK. Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND). Magn Reson Med. 2016 09; 76(3):963-77. View abstract
  44. Wintermark P, Lechpammer M, Kosaras B, Jensen FE, Warfield SK. Brain Perfusion Is Increased at Term in the White Matter of Very Preterm Newborns and Newborns with Congenital Heart Disease: Does this Reflect Activated Angiogenesis? Neuropediatrics. 2015 Oct; 46(5):344-51. View abstract
  45. Jia Y, He Z, Gholipour A, Warfield SK. Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices. IEEE J Biomed Health Inform. 2016 11; 20(6):1552-1561. View abstract
  46. Gorthi S, Akhondi-Asl A, Warfield SK. Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information. IEEE J Biomed Health Inform. 2015 Sep; 19(5):1589-97. View abstract
  47. Taimouri V, Afacan O, Perez-Rossello JM, Callahan MJ, Mulkern RV, Warfield SK, Freiman M. Spatially constrained incoherent motion method improves diffusion-weighted MRI signal decay analysis in the liver and spleen. Med Phys. 2015 Apr; 42(4):1895-903. View abstract
  48. Erem B, Hyde DE, Peters JM, Duffy FH, Brooks DH, Warfield SK. COMBINED DELAY AND GRAPH EMBEDDING OF EPILEPTIC DISCHARGES IN EEG REVEALS COMPLEX AND RECURRENT NONLINEAR DYNAMICS. Proc IEEE Int Symp Biomed Imaging. 2015 Apr; 2015:347-350. View abstract
  49. Im K, Ahtam B, Haehn D, Peters JM, Warfield SK, Sahin M, Ellen Grant P. Altered Structural Brain Networks in Tuberous Sclerosis Complex. Cereb Cortex. 2016 May; 26(5):2046-58. View abstract
  50. Velasco-Annis C, Gholipour A, Afacan O, Prabhu SP, Estroff JA, Warfield SK. Normative biometrics for fetal ocular growth using volumetric MRI reconstruction. Prenat Diagn. 2015 Apr; 35(4):400-8. View abstract
  51. Shaikh H, Lechpammer M, Jensen FE, Warfield SK, Hansen AH, Kosaras B, Shevell M, Wintermark P. Increased Brain Perfusion Persists over the First Month of Life in Term Asphyxiated Newborns Treated with Hypothermia: Does it Reflect Activated Angiogenesis? Transl Stroke Res. 2015 Jun; 6(3):224-33. View abstract
  52. Tomas-Fernandez X, Warfield SK. A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation. IEEE Trans Med Imaging. 2015 Jun; 34(6):1349-61. View abstract
  53. Scherrer B, Afacan O, Taquet M, Prabhu SP, Gholipour A, Warfield SK. Accelerated High Spatial Resolution Diffusion-Weighted Imaging. Inf Process Med Imaging. 2015; 24:69-81. View abstract
  54. Kurugol S, Freiman M, Afacan O, Domachevsky L, Perez-Rossello JM, Callahan MJ, Warfield SK. Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME). Med Image Comput Comput Assist Interv. 2015; 9351:501-9. View abstract
  55. Gholipour A, Lee EY, Warfield SK. The anatomy and art of writing a successful grant application: a practical step-by-step approach. Pediatr Radiol. 2014 Dec; 44(12):1512-7. View abstract
  56. Gholipour A, Estroff JA, Barnewolt CE, Robertson RL, Grant PE, Gagoski B, Warfield SK, Afacan O, Connolly SA, Neil JJ, Wolfberg A, Mulkern RV. Fetal MRI: A Technical Update with Educational Aspirations. Concepts Magn Reson Part A Bridg Educ Res. 2014 Nov; 43(6):237-266. View abstract
  57. Siversson C, Akhondi-Asl A, Bixby S, Kim YJ, Warfield SK. Three-dimensional hip cartilage quality assessment of morphology and dGEMRIC by planar maps and automated segmentation. Osteoarthritis Cartilage. 2014 Oct; 22(10):1511-5. View abstract
  58. Suarez RO, Taimouri V, Boyer K, Vega C, Rotenberg A, Madsen JR, Loddenkemper T, Duffy FH, Prabhu SP, Warfield SK. Passive fMRI mapping of language function for pediatric epilepsy surgical planning: validation using Wada, ECS, and FMAER. Epilepsy Res. 2014 Dec; 108(10):1874-88. View abstract
  59. Hyde DE, Duffy FH, Warfield SK. Voxel-based dipole orientation constraints for distributed current estimation. IEEE Trans Biomed Eng. 2014 Jul; 61(7):2028-40. View abstract
  60. Akhondi-Asl A, Hoyte L, Lockhart ME, Warfield SK. A logarithmic opinion pool based STAPLE algorithm for the fusion of segmentations with associated reliability weights. IEEE Trans Med Imaging. 2014 Oct; 33(10):1997-2009. View abstract
  61. Hunold A, Haueisen J, Ahtam B, Doshi C, Harini C, Camposano S, Warfield SK, Grant PE, Okada Y, Papadelis C. Localization of the epileptogenic foci in tuberous sclerosis complex: a pediatric case report. Front Hum Neurosci. 2014; 8:175. View abstract
  62. Garlapati RR, Roy A, Joldes GR, Wittek A, Mostayed A, Doyle B, Warfield SK, Kikinis R, Knuckey N, Bunt S, Miller K. More accurate neuronavigation data provided by biomechanical modeling instead of rigid registration. J Neurosurg. 2014 Jun; 120(6):1477-83. View abstract
  63. Akhondi-Asl A, Afacan O, Mulkern RV, Warfield SK. T(2)-relaxometry for myelin water fraction extraction using wald distribution and extended phase graph. Med Image Comput Comput Assist Interv. 2014; 17(Pt 3):145-52. View abstract
  64. Taquet M, Scherrer B, Peters JM, Prabhu SP, Warfield SK. A fully Bayesian inference framework for population studies of the brain microstructure. Med Image Comput Comput Assist Interv. 2014; 17(Pt 1):25-32. View abstract
  65. Gholipour A, Limperopoulos C, Clancy S, Clouchoux C, Akhondi-Asl A, Estroff JA, Warfield SK. Construction of a deformable spatiotemporal MRI atlas of the fetal brain: evaluation of similarity metrics and deformation models. Med Image Comput Comput Assist Interv. 2014; 17(Pt 2):292-9. View abstract
  66. Thompson DK, Lee KJ, Egan GF, Warfield SK, Doyle LW, Anderson PJ, Inder TE. Regional white matter microstructure in very preterm infants: predictors and 7 year outcomes. Cortex. 2014 Mar; 52:60-74. View abstract
  67. Taquet M, Scherrer B, Commowick O, Peters JM, Sahin M, Macq B, Warfield SK. A mathematical framework for the registration and analysis of multi-fascicle models for population studies of the brain microstructure. IEEE Trans Med Imaging. 2014 Feb; 33(2):504-17. View abstract
  68. Suinesiaputra A, Cowan BR, Al-Agamy AO, Elattar MA, Ayache N, Fahmy AS, Khalifa AM, Medrano-Gracia P, Jolly MP, Kadish AH, Lee DC, Margeta J, Warfield SK, Young AA. A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Med Image Anal. 2014 Jan; 18(1):50-62. View abstract
  69. Peters JM, Taquet M, Prohl AK, Scherrer B, van Eeghen AM, Prabhu SP, Sahin M, Warfield SK. Diffusion tensor imaging and related techniques in tuberous sclerosis complex: review and future directions. Future Neurol. 2013 Sep; 8(5):583-597. View abstract
  70. Liszewski MC, Hersman FW, Altes TA, Ohno Y, Ciet P, Warfield SK, Lee EY. Magnetic resonance imaging of pediatric lung parenchyma, airways, vasculature, ventilation, and perfusion: state of the art. Radiol Clin North Am. 2013 Jul; 51(4):555-82. View abstract
  71. Hammond DK, Scherrer B, Warfield SK. Cortical graph smoothing: a novel method for exploiting DWI-derived anatomical brain connectivity to improve EEG source estimation. IEEE Trans Med Imaging. 2013 Oct; 32(10):1952-63. View abstract
  72. Taimouri V, Akhondi-Asl A, Tomas-Fernandez X, Peters JM, Prabhu SP, Poduri A, Takeoka M, Loddenkemper T, Bergin AM, Harini C, Madsen JR, Warfield SK. Electrode localization for planning surgical resection of the epileptogenic zone in pediatric epilepsy. Int J Comput Assist Radiol Surg. 2014 Jan; 9(1):91-105. View abstract
  73. Mostayed A, Garlapati RR, Joldes GR, Wittek A, Roy A, Kikinis R, Warfield SK, Miller K. Biomechanical model as a registration tool for image-guided neurosurgery: evaluation against BSpline registration. Ann Biomed Eng. 2013 Nov; 41(11):2409-25. View abstract
  74. Akhondi-Asl A, Warfield SK. Simultaneous truth and performance level estimation through fusion of probabilistic segmentations. IEEE Trans Med Imaging. 2013 Oct; 32(10):1840-52. View abstract
  75. Wintermark P, Lechpammer M, Warfield SK, Kosaras B, Takeoka M, Poduri A, Madsen JR, Bergin AM, Whalen S, Jensen FE. Perfusion Imaging of Focal Cortical Dysplasia Using Arterial Spin Labeling: Correlation With Histopathological Vascular Density. J Child Neurol. 2013 Nov; 28(11):1474-1482. View abstract
  76. Wintermark P, Hansen A, Warfield SK, Dukhovny D, Soul JS. Near-infrared spectroscopy versus magnetic resonance imaging to study brain perfusion in newborns with hypoxic-ischemic encephalopathy treated with hypothermia. Neuroimage. 2014 Jan 15; 85 Pt 1:287-93. View abstract
  77. Peters JM, Taquet M, Vega C, Jeste SS, Fernández IS, Tan J, Nelson CA, Sahin M, Warfield SK. Brain functional networks in syndromic and non-syndromic autism: a graph theoretical study of EEG connectivity. BMC Med. 2013 Feb 27; 11:54. View abstract
  78. McAnulty G, Duffy FH, Kosta S, Weisenfeld NI, Warfield SK, Butler SC, Alidoost M, Bernstein JH, Robertson R, Zurakowski D, Als H. School-age effects of the newborn individualized developmental care and assessment program for preterm infants with intrauterine growth restriction: preliminary findings. BMC Pediatr. 2013 Feb 19; 13:25. View abstract
  79. Weisenfeld NI, Peters JM, Tsai PT, Prabhu SP, Dies KA, Sahin M, Warfield SK. A magnetic resonance imaging study of cerebellar volume in tuberous sclerosis complex. Pediatr Neurol. 2013 Feb; 48(2):105-10. View abstract
  80. Thompson DK, Adamson C, Roberts G, Faggian N, Wood SJ, Warfield SK, Doyle LW, Anderson PJ, Egan GF, Inder TE. Hippocampal shape variations at term equivalent age in very preterm infants compared with term controls: perinatal predictors and functional significance at age 7. Neuroimage. 2013 Apr 15; 70:278-87. View abstract
  81. Freiman M, Perez-Rossello JM, Callahan MJ, Voss SD, Ecklund K, Mulkern RV, Warfield SK. Reliable estimation of incoherent motion parametric maps from diffusion-weighted MRI using fusion bootstrap moves. Med Image Anal. 2013 Apr; 17(3):325-36. View abstract
  82. Scherrer B, Schwartzman A, Taquet M, Prabhu SP, Sahin M, Akhondi-Asl A, Warfield SK. Characterizing the distribution of anisotropic micro-structural environments with diffusion-weighted imaging (DIAMOND). Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):518-26. View abstract
  83. Freiman M, Afacan O, Mulkern RV, Warfield SK. Improved multi B-value diffusion-weighted MRI of the body by simultaneous model estimation and image reconstruction (SMEIR). Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):1-8. View abstract
  84. Scherrer B, Taquet M, Warfield SK. Reliable selection of the number of fascicles in diffusion images by estimation of the generalization error. Inf Process Med Imaging. 2013; 23:742-53. View abstract
  85. Taquet M, Scherrer B, Boumal N, Macq B, Warfield SK. Estimation of a multi-fascicle model from single B-value data with a population-informed prior. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):695-702. View abstract
  86. Benjamin CF, Singh JM, Prabhu SP, Warfield SK. Optimization of tractography of the optic radiations. Hum Brain Mapp. 2014 Feb; 35(2):683-97. View abstract
  87. Scherrer B, Warfield SK. Parametric representation of multiple white matter fascicles from cube and sphere diffusion MRI. PLoS One. 2012; 7(11):e48232. View abstract
  88. Clouchoux C, du Plessis AJ, Bouyssi-Kobar M, Tworetzky W, McElhinney DB, Brown DW, Gholipour A, Kudelski D, Warfield SK, McCarter RJ, Robertson RL, Evans AC, Newburger JW, Limperopoulos C. Delayed cortical development in fetuses with complex congenital heart disease. Cereb Cortex. 2013 Dec; 23(12):2932-43. View abstract
  89. Freiman M, Perez-Rossello JM, Callahan MJ, Bittman M, Mulkern RV, Bousvaros A, Warfield SK. Characterization of fast and slow diffusion from diffusion-weighted MRI of pediatric Crohn's disease. J Magn Reson Imaging. 2013 Jan; 37(1):156-63. View abstract
  90. Freiman M, Voss SD, Mulkern RV, Perez-Rossello JM, Callahan MJ, Warfield SK. In vivo assessment of optimal b-value range for perfusion-insensitive apparent diffusion coefficient imaging. Med Phys. 2012 Aug; 39(8):4832-9. View abstract
  91. Scherrer B, Gholipour A, Warfield SK. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal. 2012 Oct; 16(7):1465-76. View abstract
  92. Lewis WW, Sahin M, Scherrer B, Peters JM, Suarez RO, Vogel-Farley VK, Jeste SS, Gregas MC, Prabhu SP, Nelson CA, Warfield SK. Impaired language pathways in tuberous sclerosis complex patients with autism spectrum disorders. Cereb Cortex. 2013 Jul; 23(7):1526-32. View abstract
  93. Hyde DE, Duffy FH, Warfield SK. Anisotropic partial volume CSF modeling for EEG source localization. Neuroimage. 2012 Sep; 62(3):2161-70. View abstract
  94. Commowick O, Akhondi-Asl A, Warfield SK. Estimating a reference standard segmentation with spatially varying performance parameters: local MAP STAPLE. IEEE Trans Med Imaging. 2012 Aug; 31(8):1593-606. View abstract
  95. Akhondi-Asl A, Hans A, Scherrer B, Peters JM, Warfield SK. WHOLE BRAIN GROUP NETWORK ANALYSIS USING NETWORK BIAS AND VARIANCE PARAMETERS. Proc IEEE Int Symp Biomed Imaging. 2012 May; 2012:1511-1514. View abstract
  96. Thompson DK, Ahmadzai ZM, Wood SJ, Inder TE, Warfield SK, Doyle LW, Egan GF. Optimizing hippocampal segmentation in infants utilizing MRI post-acquisition processing. Neuroinformatics. 2012 Apr; 10(2):173-80. View abstract
  97. Gholipour A, Akhondi-Asl A, Estroff JA, Warfield SK. Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. Neuroimage. 2012 Apr 15; 60(3):1819-31. View abstract
  98. Als H, Duffy FH, McAnulty G, Butler SC, Lightbody L, Kosta S, Weisenfeld NI, Robertson R, Parad RB, Ringer SA, Blickman JG, Zurakowski D, Warfield SK. NIDCAP improves brain function and structure in preterm infants with severe intrauterine growth restriction. J Perinatol. 2012 Oct; 32(10):797-803. View abstract
  99. Vigneron LM, Noels L, Warfield SK, Verly JG, Robe PA. Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI. Int J Biomed Imaging. 2012; 2012:872783. View abstract
  100. Freiman M, Voss SD, Mulkern RV, Perez-Rossello JM, Callahan MJ, Warfield SK. Reliable assessment of perfusivity and diffusivity from diffusion imaging of the body. Med Image Comput Comput Assist Interv. 2012; 15(Pt 1):1-9. View abstract
  101. Akhondi-Asl A, Warfield SK. Estimation of the prior distribution of ground truth in the STAPLE algorithm: an empirical Bayesian approach. Med Image Comput Comput Assist Interv. 2012; 15(Pt 1):593-600. View abstract
  102. Peters JM, Sahin M, Vogel-Farley VK, Jeste SS, Nelson CA, Gregas MC, Prabhu SP, Scherrer B, Warfield SK. Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex. Acad Radiol. 2012 Jan; 19(1):17-25. View abstract
  103. Taquet M, Scherrer B, Commowick O, Peters J, Sahin M, Macq B, Warfield SK. Registration and analysis of white matter group differences with a multi-fiber model. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):313-20. View abstract
  104. McAnulty G, Duffy FH, Kosta S, Weisenfeld NI, Warfield SK, Butler SC, Bernstein JH, Zurakowski D, Als H. School Age Effects of the Newborn Individualized Developmental Care and Assessment Program for Medically Low-Risk Preterm Infants: Preliminary Findings. J Clin Neonatol. 2012; 1(4):184-194. View abstract
  105. Scherrer B, Gholipour A, Warfield SK. Super-Resolution Reconstruction of Diffusion-Weighted Images from Distortion Compensated Orthogonal Anisotropic Acquisitions. Proc Workshop Math Methods Biomed Image Analysis. 2012 Jan; 2012:249-254. View abstract
  106. Thompson DK, Inder TE, Faggian N, Warfield SK, Anderson PJ, Doyle LW, Egan GF. Corpus callosum alterations in very preterm infants: perinatal correlates and 2 year neurodevelopmental outcomes. Neuroimage. 2012 Feb 15; 59(4):3571-81. View abstract
  107. Suarez RO, Commowick O, Prabhu SP, Warfield SK. Automated delineation of white matter fiber tracts with a multiple region-of-interest approach. Neuroimage. 2012 Feb 15; 59(4):3690-700. View abstract
  108. Wintermark P, Warfield SK. New insights in perinatal arterial ischemic stroke by assessing brain perfusion. Transl Stroke Res. 2012 Jun; 3(2):255-62. View abstract
  109. Wintermark P, Hansen A, Gregas MC, Soul J, Labrecque M, Robertson RL, Warfield SK. Brain perfusion in asphyxiated newborns treated with therapeutic hypothermia. AJNR Am J Neuroradiol. 2011 Dec; 32(11):2023-9. View abstract
  110. Clouchoux C, Kudelski D, Gholipour A, Warfield SK, Viseur S, Bouyssi-Kobar M, Mari JL, Evans AC, du Plessis AJ, Limperopoulos C. Quantitative in vivo MRI measurement of cortical development in the fetus. Brain Struct Funct. 2012 Jan; 217(1):127-39. View abstract
  111. Akselrod-Ballin A, Bock D, Reid RC, Warfield SK. Accelerating image registration with the Johnson-Lindenstrauss lemma: application to imaging 3-D neural ultrastructure with electron microscopy. IEEE Trans Med Imaging. 2011 Jul; 30(7):1427-38. View abstract
  112. Hoyte L, Ye W, Brubaker L, Fielding JR, Lockhart ME, Heilbrun ME, Brown MB, Warfield SK. Segmentations of MRI images of the female pelvic floor: a study of inter- and intra-reader reliability. J Magn Reson Imaging. 2011 Mar; 33(3):684-91. View abstract
  113. Gholipour A, Polak M, van der Kouwe A, Nevo E, Warfield SK. Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:5722-5. View abstract
  114. Freiman M, Voss SD, Mulkern RV, Perez-Rossello JM, Warfield SK. Quantitative body DW-MRI biomarkers uncertainty estimation using unscented wild-bootstrap. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):74-81. View abstract
  115. Taquet M, Macq B, Warfield SK. Spatially adaptive log-euclidean polyaffine registration based on sparse matches. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):590-7. View abstract
  116. Gholipour A, Kehtarnavaz N, Scherrer B, Warfield SK. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:6997-7000. View abstract
  117. Vigneron LM, Warfield SK, Robe PA, Verly JG. 3D XFEM-based modeling of retraction for preoperative image update. Comput Aided Surg. 2011; 16(3):121-34. View abstract
  118. Scherrer B, Gholipour A, Warfield SK. Super-resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):124-32. View abstract
  119. Weisenfeld NI, Warfield SK. Learning likelihoods for labeling (L3): a general multi-classifier segmentation algorithm. Med Image Comput Comput Assist Interv. 2011; 14(Pt 3):322-9. View abstract
  120. Thompson DK, Inder TE, Faggian N, Johnston L, Warfield SK, Anderson PJ, Doyle LW, Egan GF. Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI. Neuroimage. 2011 Mar 15; 55(2):479-90. View abstract
  121. Wittek A, Joldes G, Couton M, Warfield SK, Miller K. Patient-specific non-linear finite element modelling for predicting soft organ deformation in real-time: application to non-rigid neuroimage registration. Prog Biophys Mol Biol. 2010 Dec; 103(2-3):292-303. View abstract
  122. Wintermark P, Labrecque M, Warfield SK, DeHart S, Hansen A. Can induced hypothermia be assured during brain MRI in neonates with hypoxic-ischemic encephalopathy? Pediatr Radiol. 2010 Dec; 40(12):1950-4. View abstract
  123. Wintermark P, Hansen A, Soul J, Labrecque M, Robertson RL, Warfield SK. Early versus late MRI in asphyxiated newborns treated with hypothermia. Arch Dis Child Fetal Neonatal Ed. 2011 Jan; 96(1):F36-44. View abstract
  124. Gholipour A, Estroff JA, Barnewolt CE, Connolly SA, Warfield SK. Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int J Comput Assist Radiol Surg. 2011 May; 6(3):329-39. View abstract
  125. Gholipour A, Estroff JA, Warfield SK. Robust super-resolution volume reconstruction from slice acquisitions: application to fetal brain MRI. IEEE Trans Med Imaging. 2010 Oct; 29(10):1739-58. View abstract
  126. Commowick O, Warfield SK. Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE. IEEE Trans Med Imaging. 2010 Mar; 29(3):771-80. View abstract
  127. Lee JW, Wen PY, Hurwitz S, Black P, Kesari S, Drappatz J, Golby AJ, Wells WM, Warfield SK, Kikinis R, Bromfield EB. Morphological characteristics of brain tumors causing seizures. Arch Neurol. 2010 Mar; 67(3):336-42. View abstract
  128. Krishnan ML, Commowick O, Jeste SS, Weisenfeld N, Hans A, Gregas MC, Sahin M, Warfield SK. Diffusion features of white matter in tuberous sclerosis with tractography. Pediatr Neurol. 2010 Feb; 42(2):101-6. View abstract
  129. Commowick O, Warfield SK. Incorporating priors on expert performance parameters for segmentation validation and label fusion: a maximum a posteriori STAPLE. Med Image Comput Comput Assist Interv. 2010; 13(Pt 3):25-32. View abstract
  130. Gholipour A, Estroff JA, Sahin M, Prabhu SP, Warfield SK. Maximum a posteriori estimation of isotropic high-resolution volumetric MRI from orthogonal thick-slice scans. Med Image Comput Comput Assist Interv. 2010; 13(Pt 2):109-16. View abstract
  131. Benders MJ, Groenendaal F, van Bel F, Ha Vinh R, Dubois J, Lazeyras F, Warfield SK, Hüppi PS, de Vries LS. Brain development of the preterm neonate after neonatal hydrocortisone treatment for chronic lung disease. Pediatr Res. 2009 Nov; 66(5):555-9. View abstract
  132. Wintermark P, Boyd T, Parast MM, Van Marter LJ, Warfield SK, Robertson RL, Ringer SA. Fetal placental thrombosis and neonatal implications. Am J Perinatol. 2010 Mar; 27(3):251-6. View abstract
  133. Schaap M, Metz CT, van Walsum T, van der Giessen AG, Weustink AC, Mollet NR, Bauer C, Bogunovic H, Castro C, Deng X, Dikici E, O'Donnell T, Frenay M, Friman O, Hernández Hoyos M, Kitslaar PH, Krissian K, Kühnel C, Luengo-Oroz MA, Orkisz M, Smedby O, Styner M, Szymczak A, Tek H, Wang C, Warfield SK, Zambal S, Zhang Y, Krestin GP, Niessen WJ. Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Med Image Anal. 2009 Oct; 13(5):701-14. View abstract
  134. Fripp J, Crozier S, Warfield SK, Ourselin S. Automatic segmentation and quantitative analysis of the articular cartilages from magnetic resonance images of the knee. IEEE Trans Med Imaging. 2010 Jan; 29(1):55-64. View abstract
  135. Weisenfeld NI, Warfield SK. Automatic segmentation of newborn brain MRI. Neuroimage. 2009 Aug 15; 47(2):564-72. View abstract
  136. Thompson DK, Wood SJ, Doyle LW, Warfield SK, Egan GF, Inder TE. MR-determined hippocampal asymmetry in full-term and preterm neonates. Hippocampus. 2009 Feb; 19(2):118-23. View abstract
  137. Commowick O, Warfield SK. Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE. Inf Process Med Imaging. 2009; 21:701-12. View abstract
  138. Commowick O, Warfield SK, Malandain G. Using Frankenstein's creature paradigm to build a patient specific atlas. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):993-1000. View abstract
  139. Vigneron LM, Duflot MP, Robe PA, Warfield SK, Verly JG. 2D XFEM-based modeling of retraction and successive resections for preoperative image update. Comput Aided Surg. 2009; 14(1-3):1-20. View abstract
  140. Akselrod-Ballin A, Bock D, Reid RC, Warfield SK. Accelerating feature based registration using the Johnson-Lindenstrauss Lemma. Med Image Comput Comput Assist Interv. 2009; 12(Pt 1):632-9. View abstract
  141. Joldes GR, Wittek A, Couton M, Warfield SK, Miller K. Real-time prediction of brain shift using nonlinear finite element algorithms. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):300-7. View abstract
  142. Commowick O, Warfield SK. A Continuous STAPLE for Scalar, Vector and Tensor Images: An Application to DTI Analysis. IEEE TMI. 2009. View abstract
  143. De Craene MS, Macq B, Marquesc F, Salembierc P, Warfield SK. Unbiased Group-wise Alignment by Iterative Central Tendency Estimation. Math. Model. Nat. Phenom. 2008; 3(6):2-32. View abstract
  144. Commowick O, Warfield SK. A continuous STAPLE for scalar, vector, and tensor images: an application to DTI analysis. IEEE Trans Med Imaging. 2009 Jun; 28(6):838-46. View abstract
  145. Rullmann M, Anwander A, Dannhauer M, Warfield SK, Duffy FH, Wolters CH. EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model. Neuroimage. 2009 Jan 15; 44(2):399-410. View abstract
  146. Spiclin Z, Hans A, Duffy FH, Warfield SK, Likar B, Pernus F. . EEG to MRI registration based on global and local similarities of MRI intensity distributions. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):762-70. View abstract
  147. Commowick O, Fillard P, Clatz O, Warfield SK. Detection of DTI white matter abnormalities in multiple sclerosis patients. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):975-82. View abstract
  148. Warfield SK, Zou KH, Wells WM. Validation of image segmentation by estimating rater bias and variance. Philos Trans A Math Phys Eng Sci. 2008 Jul 13; 366(1874):2361-75. View abstract
  149. Dubois J, Benders M, Borradori-Tolsa C, Cachia A, Lazeyras F, Ha-Vinh Leuchter R, Sizonenko SV, Warfield SK, Mangin JF, Hüppi PS. Primary cortical folding in the human newborn: an early marker of later functional development. Brain. 2008 Aug; 131(Pt 8):2028-41. View abstract
  150. Hoyte L, Damaser MS, Warfield SK, Chukkapalli G, Majumdar A, Choi DJ, Trivedi A, Krysl P. Quantity and distribution of levator ani stretch during simulated vaginal childbirth. Am J Obstet Gynecol. 2008 Aug; 199(2):198.e1-5. View abstract
  151. Wisco JJ, Rosene DL, Killiany RJ, Moss MB, Warfield SK, Egorova S, Wu Y, Liptak Z, Warner J, Guttmann CR. A rhesus monkey reference label atlas for template driven segmentation. J Med Primatol. 2008 Oct; 37(5):250-60. View abstract
  152. Thompson DK, Wood SJ, Doyle LW, Warfield SK, Lodygensky GA, Anderson PJ, Egan GF, Inder TE. Neonate hippocampal volumes: prematurity, perinatal predictors, and 2-year outcome. Ann Neurol. 2008 May; 63(5):642-51. View abstract
  153. Lodygensky GA, Seghier ML, Warfield SK, Tolsa CB, Sizonenko S, Lazeyras F, Hüppi PS. Intrauterine growth restriction affects the preterm infant's hippocampus. Pediatr Res. 2008 Apr; 63(4):438-43. View abstract
  154. Rivkin MJ, Davis PE, Lemaster JL, Cabral HJ, Warfield SK, Mulkern RV, Robson CD, Rose-Jacobs R, Frank DA. Volumetric MRI study of brain in children with intrauterine exposure to cocaine, alcohol, tobacco, and marijuana. Pediatrics. 2008 Apr; 121(4):741-50. View abstract
  155. Archip N, Clatz O, Whalen S, Dimaio SP, Black PM, Jolesz FA, Golby A, Warfield SK. Compensation of geometric distortion effects on intraoperative magnetic resonance imaging for enhanced visualization in image-guided neurosurgery. Neurosurgery. 2008 Mar; 62(3 Suppl 1):209-15; discussion 215-6. View abstract
  156. Spiclin Z, Hans A, Duffy FH, Warfield SK, Likar B, Pernus F. EEG to MRI registration based on global and local similarities of MRI intensity distributions. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):762-70. View abstract
  157. Commowick O, Fillard P, Clatz O, Warfield SK. Detection of DTI white matter abnormalities in multiple sclerosis patients. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):975-82. View abstract
  158. Comparison of the deformations of brain tissues caused by tumor in seizure and non-seizure patients. 2008. View abstract
  159. Downing KT, Hoyte LP, Warfield SK, Weidner AC. Racial differences in pelvic floor muscle thickness in asymptomatic nulliparas as seen on magnetic resonance imaging-based three-dimensional color thickness mapping. Am J Obstet Gynecol. 2007 Dec; 197(6):625.e1-4. View abstract
  160. Maddah M, Grimson WE, Warfield SK, Wells WM. A unified framework for clustering and quantitative analysis of white matter fiber tracts. Med Image Anal. 2008 Apr; 12(2):191-202. View abstract
  161. Archip N, Jolesz FA, Warfield SK. A validation framework for brain tumor segmentation. Acad Radiol. 2007 Oct; 14(10):1242-51. View abstract
  162. Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain. Neuroimage. 2007 Aug 15; 37(2):530-8. View abstract
  163. Wisco JJ, Killiany RJ, Guttmann CR, Warfield SK, Moss MB, Rosene DL. An MRI study of age-related white and gray matter volume changes in the rhesus monkey. Neurobiol Aging. 2008 Oct; 29(10):1563-75. View abstract
  164. Mewes AU, Zöllei L, Hüppi PS, Als H, McAnulty GB, Inder TE, Wells WM, Warfield SK. Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI. Neuroimage. 2007 Jul 15; 36(4):1074-85. View abstract
  165. Fripp J, Crozier S, Warfield SK, Ourselin S. Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. Phys Med Biol. 2007 Mar 21; 52(6):1617-31. View abstract
  166. Dauguet J, Bock D, Reid RC, Warfield SK. Alignment of large image series using cubic B-splines tessellation: application to transmission electron microscopy data. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):710-7. View abstract
  167. Archip N, Tatli S, Morrison P, Jolesz F, Warfield SK, Silverman S. Non-rigid registration of pre-procedural MR images with intra-procedural unenhanced CT images for improved targeting of tumors during liver radiofrequency ablations. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):969-77. View abstract
  168. Maddah M, Wells WM, Warfield SK, Westin CF, Grimson WE. Probabilistic clustering and quantitative analysis of white matter fiber tracts. Inf Process Med Imaging. 2007; 20:372-83. View abstract
  169. Fripp J, Crozier S, Warfield SK, Ourselin S. Automatic segmentation of articular cartilage in magnetic resonance images of the knee. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):186-94. View abstract
  170. Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee. 2007. View abstract
  171. Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data. 2007. View abstract
  172. Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery. 2007. View abstract
  173. Non-rigid Registration of Pre-procedural MR Images with Intra-procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations. 2007. View abstract
  174. Probabilistic Clustering and Quantitative Analysis of White Matter Fiber Tracts. 2007. View abstract
  175. Archip N, Clatz O, Whalen S, Kacher D, Fedorov A, Kot A, Chrisochoides N, Jolesz F, Golby A, Black PM, Warfield SK. Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. Neuroimage. 2007 Apr 01; 35(2):609-24. View abstract
  176. Alayón S, Robertson R, Warfield SK, Ruiz-Alzola J. A fuzzy system for helping medical diagnosis of malformations of cortical development. J Biomed Inform. 2007 Jun; 40(3):221-35. View abstract
  177. Jannin P, Krupinski E, Warfield S. Validation in medical image processing. IEEE Trans Med Imaging. 2006 Nov; 25(11):1405-9. View abstract
  178. Thompson DK, Warfield SK, Carlin JB, Pavlovic M, Wang HX, Bear M, Kean MJ, Doyle LW, Egan GF, Inder TE. Perinatal risk factors altering regional brain structure in the preterm infant. Brain. 2007 Mar; 130(Pt 3):667-77. View abstract
  179. Dimaio SP, Archip N, Hata N, Talos IF, Warfield SK, Majumdar A, Mcdannold N, Hynynen K, Morrison PR, Wells WM, Kacher DF, Ellis RE, Golby AJ, Black PM, Jolesz FA, Kikinis R. Image-guided neurosurgery at Brigham and Women's Hospital. IEEE Eng Med Biol Mag. 2006 Sep-Oct; 25(5):67-73. View abstract
  180. Shah DK, Guinane C, August P, Austin NC, Woodward LJ, Thompson DK, Warfield SK, Clemett R, Inder TE. Reduced occipital regional volumes at term predict impaired visual function in early childhood in very low birth weight infants. Invest Ophthalmol Vis Sci. 2006 Aug; 47(8):3366-73. View abstract
  181. Goldberg-Zimring D, Warfield SK. Novel image processing techniques to better understand white matter disruption in multiple sclerosis. Autoimmun Rev. 2006 Oct; 5(8):544-8. View abstract
  182. Mewes AU, Hüppi PS, Als H, Rybicki FJ, Inder TE, McAnulty GB, Mulkern RV, Robertson RL, Rivkin MJ, Warfield SK. Regional brain development in serial magnetic resonance imaging of low-risk preterm infants. Pediatrics. 2006 Jul; 118(1):23-33. View abstract
  183. Wu Y, Warfield SK, Tan IL, Wells WM, Meier DS, van Schijndel RA, Barkhof F, Guttmann CR. Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI. Neuroimage. 2006 Sep; 32(3):1205-15. View abstract
  184. Shah DK, Anderson PJ, Carlin JB, Pavlovic M, Howard K, Thompson DK, Warfield SK, Inder TE. Reduction in cerebellar volumes in preterm infants: relationship to white matter injury and neurodevelopment at two years of age. Pediatr Res. 2006 Jul; 60(1):97-102. View abstract
  185. Wittek A, Miller K, Kikinis R, Warfield SK. Patient-specific model of brain deformation: application to medical image registration. J Biomech. 2007; 40(4):919-29. View abstract
  186. Zacharia A, Zimine S, Lovblad KO, Warfield S, Thoeny H, Ozdoba C, Bossi E, Kreis R, Boesch C, Schroth G, Hüppi PS. Early assessment of brain maturation by MR imaging segmentation in neonates and premature infants. AJNR Am J Neuroradiol. 2006 May; 27(5):972-7. View abstract
  187. Warfield SK, Zou KH, Wells WM. Validation of image segmentation by estimating rater bias and variance. Med Image Comput Comput Assist Interv. 2006; 9(Pt 2):839-47. View abstract
  188. Weisenfeld NI, Mewes AU, Warfield SK. Highly accurate segmentation of brain tissue and subcortical gray matter from newborn MRI. Med Image Comput Comput Assist Interv. 2006; 9(Pt 1):199-206. View abstract
  189. Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. 3D histological reconstruction of fiber tracts and direct comparison with diffusion tensor MRI tractography. Med Image Comput Comput Assist Interv. 2006; 9(Pt 1):109-16. View abstract
  190. Highly Accurate Segmentation of Brain Tissue and Subcortical Gray Matter from Newborn MRI. 2006. View abstract
  191. Automatic Segmentation of the Knee Bones using 3D Active Shape Models. 2006. View abstract
  192. Statistical modeling and EM clustering of white matter fiber tracts. 2006. View abstract
  193. Validation of Image Segmentation by Estimating Rater Bias and Variance. 2006. View abstract
  194. Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing. 2006. View abstract
  195. Image-guided neurosurgery at Brigham and Women's Hospital. 2006. View abstract
  196. 3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography. 2006. View abstract
  197. On-Demand High Performance Computing: Image Guided Neuro-Surgery Feasibility Study. 2006. View abstract
  198. Segmentation of newborn brain MRI. 2006. View abstract
  199. An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images. 2006. View abstract
  200. Zou KH, Greve DN, Wang M, Pieper SD, Warfield SK, White NS, Manandhar S, Brown GG, Vangel MG, Kikinis R, Wells WM. Reproducibility of functional MR imaging: preliminary results of prospective multi-institutional study performed by Biomedical Informatics Research Network. Radiology. 2005 Dec; 237(3):781-9. View abstract
  201. du Bois d'Aische A, Craene MD, Geets X, Gregoire V, Macq B, Warfield SK. Efficient multi-modal dense field non-rigid registration: alignment of histological and section images. Med Image Anal. 2005 Dec; 9(6):538-46. View abstract
  202. Clatz O, Delingette H, Talos IF, Golby AJ, Kikinis R, Jolesz FA, Ayache N, Warfield SK. Robust nonrigid registration to capture brain shift from intraoperative MRI. IEEE Trans Med Imaging. 2005 Nov; 24(11):1417-27. View abstract
  203. Tsai A, Wells WM, Warfield SK, Willsky AS. An EM algorithm for shape classification based on level sets. Med Image Anal. 2005 Oct; 9(5):491-502. View abstract
  204. Limperopoulos C, Soul JS, Haidar H, Huppi PS, Bassan H, Warfield SK, Robertson RL, Moore M, Akins P, Volpe JJ, du Plessis AJ. Impaired trophic interactions between the cerebellum and the cerebrum among preterm infants. Pediatrics. 2005 Oct; 116(4):844-50. View abstract
  205. Clatz O, Sermesant M, Bondiau PY, Delingette H, Warfield SK, Malandain G, Ayache N. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. IEEE Trans Med Imaging. 2005 Oct; 24(10):1334-46. View abstract
  206. Haidar H, Warfield SK, Soul JS. Talairach-based parcellation of neonatal brain magnetic resonance imaging data: validation of a new approach. J Neuroimaging. 2005 Oct; 15(4):305-14. View abstract
  207. Wolfson L, Wei X, Hall CB, Panzer V, Wakefield D, Benson RR, Schmidt JA, Warfield SK, Guttmann CR. Accrual of MRI white matter abnormalities in elderly with normal and impaired mobility. J Neurol Sci. 2005 May 15; 232(1-2):23-7. View abstract
  208. Zou KH, Tuncali K, Warfield SK, Zentai CP, Worku D, Morrison PR, Silverman SG. Three-dimensional assessment of MR imaging-guided percutaneous cryotherapy using multi-performer repeated segmentations: the value of supervised learning. Acad Radiol. 2005 Apr; 12(4):444-50. View abstract
  209. Verhey JF, Wisser J, Warfield SK, Rexilius J, Kikinis R. Non-rigid registration of a 3D ultrasound and a MR image data set of the female pelvic floor using a biomechanical model. Biomed Eng Online. 2005 Mar 18; 4:19. View abstract
  210. Limperopoulos C, Soul JS, Gauvreau K, Huppi PS, Warfield SK, Bassan H, Robertson RL, Volpe JJ, du Plessis AJ. Late gestation cerebellar growth is rapid and impeded by premature birth. Pediatrics. 2005 Mar; 115(3):688-95. View abstract
  211. Inder TE, Warfield SK, Wang H, Hüppi PS, Volpe JJ. Abnormal cerebral structure is present at term in premature infants. Pediatrics. 2005 Feb; 115(2):286-94. View abstract
  212. Archip N, Rohling R, Cooperberg P, Tahmasebpour H, Warfield SK. Spectral clustering algorithms for ultrasound image segmentation. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):862-9. View abstract
  213. Wittek A, Kikinis R, Warfield SK, Miller K. Brain shift computation using a fully nonlinear biomechanical model. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):583-90. View abstract
  214. Goldberg-Zimring D, Mewes AU, Maddah M, Warfield SK. Diffusion tensor magnetic resonance imaging in multiple sclerosis. J Neuroimaging. 2005; 15(4 Suppl):68S-81S. View abstract
  215. Haker S, Wells WM, Warfield SK, Talos IF, Bhagwat JG, Goldberg-Zimring D, Mian A, Ohno-Machado L, Zou KH. Combining classifiers using their receiver operating characteristics and maximum likelihood estimation. Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):506-14. View abstract
  216. Wiegand LC, Warfield SK, Levitt JJ, Hirayasu Y, Salisbury DF, Heckers S, Bouix S, Schwartz D, Spencer M, Dickey CC, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. An in vivo MRI study of prefrontal cortical complexity in first-episode psychosis. Am J Psychiatry. 2005 Jan; 162(1):65-70. View abstract
  217. Maddah M, Mewes AU, Haker S, Grimson WE, Warfield SK. Automated atlas-based clustering of white matter fiber tracts from DTMRI. Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):188-95. View abstract
  218. Clatz O, Delingette H, Talos IF, Golby AJ, Kikinis R, Jolesz FA, Ayache N, Warfield SK. Hybrid formulation of the model-based non-rigid registration problem to improve accuracy and robustness. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):295-302. View abstract
  219. du Bois d'Aische A, De Craene M, Macq B, Warfield S. An improved articulated registration method for neck images. Conf Proc IEEE Eng Med Biol Soc. 2005; 7:7668-71. View abstract
  220. A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery. 2005. View abstract
  221. Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI. 2005. View abstract
  222. Robust nonrigid registration to capture brain shift from intraoperative MRI. 2005. View abstract
  223. Brain Shift Computation Using a Fully Nonlinear Biomechanical Model. 2005. View abstract
  224. An articulated registration method. 2005. View abstract
  225. Medical Image Analysis for Image Guided Therapy. 2005. View abstract
  226. Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. 2005. View abstract
  227. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. 2005. View abstract
  228. brid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness. 2005. View abstract
  229. 3D Statistical Shape Models to Embed Spatial Relationship Information. 2005. View abstract
  230. Goldberg-Zimring D, Meier DS, Bouix S, Warfield SK. Studying anatomy and disease in medical images using shape analysis. Leondes CT, editor. Medical Imaging Systems Technology: Methods in Diagnosis Optimization. 2005; 4:329-361. View abstract
  231. Spectral Clustering Algorithms for Ultrasound Image Segmentation. 2005. View abstract
  232. Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation. 2005. View abstract
  233. Warfield SK, Haker SJ, Talos IF, Kemper CA, Weisenfeld N, Mewes AU, Goldberg-Zimring D, Zou KH, Westin CF, Wells WM, Tempany CM, Golby A, Black PM, Jolesz FA, Kikinis R. Capturing intraoperative deformations: research experience at Brigham and Women's Hospital. Med Image Anal. 2005 Apr; 9(2):145-62. View abstract
  234. Hoyte L, Jakab M, Warfield SK, Shott S, Flesh G, Fielding JR. Levator ani thickness variations in symptomatic and asymptomatic women using magnetic resonance-based 3-dimensional color mapping. Am J Obstet Gynecol. 2004 Sep; 191(3):856-61. View abstract
  235. Silverman SG, Sun MR, Tuncali K, Morrison PR, vanSonnenberg E, Shankar S, Zou KH, Warfield SK. Three-dimensional assessment of MRI-guided percutaneous cryotherapy of liver metastases. AJR Am J Roentgenol. 2004 Sep; 183(3):707-12. View abstract
  236. Pohl KM, Warfield SK, Kikinis R, Grimson WEL, Wells WM. Coupling Statistical Segmentation and PCA Shape Modeling. Med Image Comput Comput Assist Interv. 2004 Sep; 3216:151-159. View abstract
  237. Wei X, Guttmann CR, Warfield SK, Eliasziw M, Mitchell JR. Has your patient's multiple sclerosis lesion burden or brain atrophy actually changed? Mult Scler. 2004 Aug; 10(4):402-6. View abstract
  238. Warfield SK, Zou KH, Wells WM. Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans Med Imaging. 2004 Jul; 23(7):903-21. View abstract
  239. Goldberg-Zimring D, Achiron A, Warfield SK, Guttmann CR, Azhari H. Application of spherical harmonics derived space rotation invariant indices to the analysis of multiple sclerosis lesions' geometry by MRI. Magn Reson Imaging. 2004 Jul; 22(6):815-25. View abstract
  240. Tolsa CB, Zimine S, Warfield SK, Freschi M, Sancho Rossignol A, Lazeyras F, Hanquinet S, Pfizenmaier M, Huppi PS. Early alteration of structural and functional brain development in premature infants born with intrauterine growth restriction. Pediatr Res. 2004 Jul; 56(1):132-8. View abstract
  241. Zou KH, Wells WM, Kikinis R, Warfield SK. Three validation metrics for automated probabilistic image segmentation of brain tumours. Stat Med. 2004 Apr 30; 23(8):1259-82. View abstract
  242. Als H, Duffy FH, McAnulty GB, Rivkin MJ, Vajapeyam S, Mulkern RV, Warfield SK, Huppi PS, Butler SC, Conneman N, Fischer C, Eichenwald EC. Early experience alters brain function and structure. Pediatrics. 2004 Apr; 113(4):846-57. View abstract
  243. Grau V, Mewes AU, Alcañiz M, Kikinis R, Warfield SK. Improved watershed transform for medical image segmentation using prior information. IEEE Trans Med Imaging. 2004 Apr; 23(4):447-58. View abstract
  244. Zou KH, Warfield SK, Bharatha A, Tempany CM, Kaus MR, Haker SJ, Wells WM, Jolesz FA, Kikinis R. Statistical validation of image segmentation quality based on a spatial overlap index. Acad Radiol. 2004 Feb; 11(2):178-89. View abstract
  245. Wiegand LC, Warfield SK, Levitt JJ, Hirayasu Y, Salisbury DF, Heckers S, Dickey CC, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Prefrontal cortical thickness in first-episode psychosis: a magnetic resonance imaging study. Biol Psychiatry. 2004 Jan 15; 55(2):131-40. View abstract
  246. Anderson NG, Warfield SK, Wells S, Spencer C, Balasingham A, Volpe JJ, Inder TE. A limited range of measures of 2-D ultrasound correlate with 3-D MRI cerebral volumes in the premature infant at term. Ultrasound Med Biol. 2004 Jan; 30(1):11-8. View abstract
  247. Tsai, Andy Wells, William M. Warfield, Simon K. Willsky, Alan S. Level Set Methods in an EM Framework for Shape Classification and Estimation. 2004; 1-9. View abstract
  248. Mahnaz Maddah Kelly H. Zou William M. Wells Ron Kikinis Simon K. Warfield. Automatic Optimization of Segmentation Algorithms Through Simultaneous Truth and Performance Level Estimation (STAPLE). 2004; 274-282. View abstract
  249. Craene MD, du Bois d’Aische A, Talos IF, Ferrant M, Black PM, Jolesz F, Kikinis R, Macq B, Warfield SK. Dense Deformation Field Estimation for Brain Intra-Operative Images Registration. SPIE Medical imaging: Image Processing. 2004. View abstract
  250. Warfield SK. Medical Image Analysis Software. 2004. View abstract
  251. Vigneron, L. Verly, J. G. Warfield, S. K. Modelling Surgical Cuts, Retractions, and Resections via Extended Finite Element Method. 2004; 311-318. View abstract
  252. Weisenfeld NI, Warfield SK. Normalization of Joint Image-Intensity Statistics in MRI using the Kullback-Leibler Divergence. International Symposium on Biomedical Imaging. 2004. View abstract
  253. Pohl, Kilian M. Warfield, Simon K. Kikinis, Ron Grimson, W. Eric L. Wells, William M. Coupling Statistical Segmentation and PCA Shape Modeling. 2004; 151-159. View abstract
  254. Zou KH, Warfield SK, Fielding JR, Tempany CM, William MW, Kaus MR, Jolesz FA, Kikinis R. Statistical validation based on parametric receiver operating characteristic analysis of continuous classification data. Acad Radiol. 2003 Dec; 10(12):1359-68. View abstract
  255. Hunt RW, Warfield SK, Wang H, Kean M, Volpe JJ, Inder TE. Assessment of the impact of the removal of cerebrospinal fluid on cerebral tissue volumes by advanced volumetric 3D-MRI in posthaemorrhagic hydrocephalus in a premature infant. J Neurol Neurosurg Psychiatry. 2003 May; 74(5):658-60. View abstract
  256. Jaume S, Ferrant M, Macq B, Hoyte L, Fielding JR, Schreyer A, Kikinis R, Warfield SK. Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. IEEE Trans Biomed Eng. 2003 Mar; 50(3):383-90. View abstract
  257. Talos IF, O’Donnell L, Westin CF, Warfield SK, Wells III W, Yoo SS, Panych LP, Golby A, Mamata H, Maier SS, Ratiu P, Guttmann CR, Black PM, Jolesz FA, Kikinis R. Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery. MICCAI 2003: Sixth International Conference on Medical Image Computing and Computer- Assisted Intervention. 2003; 407–415. View abstract
  258. Ruiz-Alzola J, Suarez E, Alberola-Lopez C, Warfield SK, Westin CF. Geostatistical Medical Image Registration. Geostatistical Medical Image Registration. MICCAI 2003: Sixth International Conference on Medical Image Computing and Computer- Assisted Intervention. 2003; 894 – 901. View abstract
  259. Warfield SK, Talos F, Kemper CA, O’Donnell L, Westin CF, Wells WM, Black PM, Jolesz FA, Kikinis R. Capturing Brain Deformation. International Symposium on Surgical Simulation and Soft Tissue Modeling. 2003; 2673:203–217. View abstract
  260. Chinzei K, Warfield SK, Hata N, Tempany CMC, Jolesz FA, Kikinis R. Planning, simulation and assistance with intraoperative MRI. Min Invas Ther and Allied Technol. 2003; 12(1-2):59-64. View abstract
  261. Ferrant M, Nabavi A, Macq B, Black PM, Jolesz FA, Kikinis R, Warfield SK. Serial registration of intraoperative MR images of the brain. Med Image Anal. 2002 Dec; 6(4):337-59. View abstract
  262. Pohl KM, Wells WM, Guimond A, Kasai K, Shenton ME, Kikinis R, Grimson WEL, Warfield SK. Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images. Med Image Comput Comput Assist Interv. 2002 Sep; 2488:564-571. View abstract
  263. Hirose M, Bharatha A, Hata N, Zou KH, Warfield SK, Cormack RA, D'Amico A, Kikinis R, Jolesz FA, Tempany CM. Quantitative MR imaging assessment of prostate gland deformation before and during MR imaging-guided brachytherapy. Acad Radiol. 2002 Aug; 9(8):906-12. View abstract
  264. Warfield SK, Talos F, Tei A, Bharatha A, Nabavi A, Ferrant M, Black PM, Jolesz FA, Kikinis R. Real-Time Registration of Volumetric Brain MRI by Biomechanical Simulation of Deformation during Image Guided Neurosurgery. Comput Visual Sci. 2002; 5(1):3-11. View abstract
  265. Ruiz-Alzola J, Westin CF, Warfield SK, Alberola C, Maier S, Kikinis R. Nonrigid registration of 3D tensor medical data. Med Image Anal. 2002 Jun; 6(2):143-61. View abstract
  266. Fielding JR, Hoyte L, Okon SA, Schreyer A, Lee J, Zou KH, Warfield S, Richie JP, Loughlin KR, O'Leary MP, Doyle CJ, Kikinis R. Tumor detection by virtual cystoscopy with color mapping of bladder wall thickness. J Urol. 2002 Feb; 167(2 Pt 1):559-62. View abstract
  267. Wei X, Warfield SK, Zou KH, Wu Y, Li X, Guimond A, Mugler JP, Benson RR, Wolfson L, Weiner HL, Guttmann CR. Quantitative analysis of MRI signal abnormalities of brain white matter with high reproducibility and accuracy. J Magn Reson Imaging. 2002 Feb; 15(2):203-9. View abstract
  268. Benson RR, Guttmann CR, Wei X, Warfield SK, Hall C, Schmidt JA, Kikinis R, Wolfson LI. Older people with impaired mobility have specific loci of periventricular abnormality on MRI. Neurology. 2002 Jan 08; 58(1):48-55. View abstract
  269. Warfield SK, Zou KH, Wells WM. Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 298–306. View abstract
  270. Pohl KM,Wells WM, Guimond A, Kasai K, Shenton ME, Kikinis R, Grimson WEL, Warfield SK. Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 564–571. View abstract
  271. Jaume S, Macq B, Warfield SK. Automated Labeling of the Cortical Surface Using a Deformable Multiresolution Mesh. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 451–458. View abstract
  272. Zou KH, Wells WM, Kaus MR, Kikinis R, Jolesz FA, Warfield SK. Statistical Validation of Automated Probabilistic Segmentation Against Composite Latent Expert Ground Truth in MR Imaging of Brain Tumors. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 315–322. View abstract
  273. Guimond A, Guttmann CRG, Warfield SK, Westin CF. Deformable Registration of DTMRI Data Based On Transformation Invariant Tensor Characteristics. International Symposium on Biomedical Imaging: Macro to Nano. 2002; 1-4. View abstract
  274. Warfield SK, Zou KH, Kaus MR, Wells WM. Simultaneous Validation of Image Segmentation and Assessment of Expert Quality. International Symposium on Biomedical Imaging: Macro to Nano. 2002; 1–4. View abstract
  275. Warfield SK, Guimond A, Roche A, Bharatha A, Tei A, Talos F, Rexilius J, Ruiz-Alzola J, Westin CF, Haker S, Angenent S, Tannenbaum A, Jolesz FA, Kikinis R. Advanced Nonrigid Registration Algorithms for Image Fusion. Toga AW, Mazziotta JC. Brain Mapping: The Methods. 2002; 661-690. View abstract
  276. Ferrant M, Nabavi A, Macq B, Jolesz FA, Kikinis R, Warfield SK. Registration of 3-D intraoperative MR images of the brain using a finite-element biomechanical model. IEEE Trans Med Imaging. 2001 Dec; 20(12):1384-97. View abstract
  277. Bharatha A, Hirose M, Hata N, Warfield SK, Ferrant M, Zou KH, Suarez-Santana E, Ruiz-Alzola J, D'Amico A, Cormack RA, Kikinis R, Jolesz FA, Tempany CM. Evaluation of three-dimensional finite element-based deformable registration of pre- and intraoperative prostate imaging. Med Phys. 2001 Dec; 28(12):2551-60. View abstract
  278. Nabavi A, Black PM, Gering DT, Westin CF, Mehta V, Pergolizzi RS, Ferrant M, Warfield SK, Hata N, Schwartz RB, Wells WM, Kikinis R, Jolesz FA. Serial intraoperative magnetic resonance imaging of brain shift. Neurosurgery. 2001 Apr; 48(4):787-97; discussion 797-8. View abstract
  279. Kaus MR, Warfield SK, Nabavi A, Black PM, Jolesz FA, Kikinis R. Automated segmentation of MR images of brain tumors. Radiology. 2001 Feb; 218(2):586-91. View abstract
  280. Murphy BP, Inder TE, Huppi PS, Warfield S, Zientara GP, Kikinis R, Jolesz FA, Volpe JJ. Impaired cerebral cortical gray matter growth after treatment with dexamethasone for neonatal chronic lung disease. Pediatrics. 2001 Feb; 107(2):217-21. View abstract
  281. Sperling RA, Guttmann CR, Hohol MJ, Warfield SK, Jakab M, Parente M, Diamond EL, Daffner KR, Olek MJ, Orav EJ, Kikinis R, Jolesz FA, Weiner HL. Regional magnetic resonance imaging lesion burden and cognitive function in multiple sclerosis: a longitudinal study. Arch Neurol. 2001 Jan; 58(1):115-21. View abstract
  282. Warfield SK, Rexilius J, Huppi PS, Inder TE, Miller EG, Wells III WM, Zientara GP, Jolesz FA, Kikinis R. A Binary Entropy Measure to Assess Nonrigid Registration Algorithms. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 266–274. View abstract
  283. Pachai C, Zhu YM, Guttmann CRG, Kikinis R, Jolesz FA, Gimenez G, Froment JC, Confavreux C, Warfield SK. Unsupervised and Adaptive Segmentation of Multispectral 3D Magnetic Resonance Images of Human Brain: a Generic Approach. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 1067–1074. View abstract
  284. Rexilius J, Warfield SK, Guttmann CRG, Wei X, Benson R, Wolfson L, Shenton M, Handels H, Kikinis R. A Novel Nonrigid Registration Algorithm and Applications. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 923–931. View abstract
  285. Hata N, Nabavi A, Wells WM, Warfield SK, Kikinis R, Black PM, Jolesz FA. Three-dimensional optical flow method for measurement of volumetric brain deformation from intraoperative MR images. J Comput Assist Tomogr. 2000 Jul-Aug; 24(4):531-8. View abstract
  286. Schreyer AG, Fielding JR, Warfield SK, Lee JH, Loughlin KR, Dumanli H, Jolesz FA, Kikinis R. Virtual CT cystoscopy: color mapping of bladder wall thickness. Invest Radiol. 2000 May; 35(5):331-4. View abstract
  287. Warfield SK, Mulkern RV, Winalski CS, Jolesz FA, Kikinis R. An image processing strategy for the quantification and visualization of exercise-induced muscle MRI signal enhancement. J Magn Reson Imaging. 2000 May; 11(5):525-31. View abstract
  288. Guttmann CR, Benson R, Warfield SK, Wei X, Anderson MC, Hall CB, Abu-Hasaballah K, Mugler JP, Wolfson L. White matter abnormalities in mobility-impaired older persons. Neurology. 2000 Mar 28; 54(6):1277-83. View abstract
  289. Warfield SK, Kaus M, Jolesz FA, Kikinis R. Adaptive, template moderated, spatially varying statistical classification. Med Image Anal. 2000 Mar; 4(1):43-55. View abstract
  290. Warfield SK, Nabavi A, Butz T, Tuncali K, Silverman SG, Black PM, Jolesz FA, Kikinis R. Intraoperative Segmentation and Nonrigid Registration For Image Guided Therapy. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 176–185. View abstract
  291. Ferrant M,Warfield SK, Nabavi A, Macq B, Kikinis R. Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 19–28. View abstract
  292. Ferrant M, Nabavi A, Macq B, Warfield SK. Deformable Modeling for Characterizing Biomedical Shape Changes. DGCI2000: Discrete Geometry for Computer Imagery. 2000; 1953(Lecture Notes in Computer Scie):235–248. View abstract
  293. Ruiz-Alzola J, Westin CF, Warfield SK, Nabavi A, Kikinis R. Nonrigid Registration of 3D Scalar, Vector and Tensor Medical Data. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 541–550. View abstract
  294. Warfield SK, Ferrant M, Gallez X, Nabavi A, Jolesz FA, Kikinis R. Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery. SC 2000: High Performance Networking and Computing Conference. 2000; 1–16. View abstract
  295. Kaus MR, Nabavi A, Mamisch CT,Wells WM, Jolesz FA, Kikinis R,Warfield SK. Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 9–18. View abstract
  296. Kikinis R, Mehta NR, Nabavi A, Chatzidakis E, Warfield SK, Gering D, Weisenfeld N, Pergolizzi RS, Schwarz RB, Hata N, Wells W, Grimson E, Black PM, Jolesz FA. Intraoperative Visualization. Mazziotta JC, Toga AW, Frackowiak RSJ. Brain Mapping: The Disorders. 2000; 107-129. View abstract
  297. Butz T,Warfield SK, Tuncali K, Silverman SG, van Sonnenberg E, Jolesz FA, Kikinis R. Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 317–326. View abstract
  298. Inder TE, Huppi PS, Warfield S, Kikinis R, Zientara GP, Barnes PD, Jolesz F, Volpe JJ. Periventricular white matter injury in the premature infant is followed by reduced cerebral cortical gray matter volume at term. Ann Neurol. 1999 Nov; 46(5):755-60. View abstract
  299. Guttmann CR, Kikinis R, Anderson MC, Jakab M, Warfield SK, Killiany RJ, Weiner HL, Jolesz FA. Quantitative follow-up of patients with multiple sclerosis using MRI: reproducibility. J Magn Reson Imaging. 1999 Apr; 9(4):509-18. View abstract
  300. Kaus MR, Warfield SK, Nabavi A, Chatzidakis E, Black PM, Jolesz FA, Kikinis R. Segmentation of MRI of meningiomas and low grade gliomas. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 1–10. View abstract
  301. Hata N, Nabavi A, Warfield S, Wells WM, Kikinis R, Jolesz FA. A volumetric optical flow method for measurement of brain deformation from intraoperative magnetic resonance images. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 928–935. View abstract
  302. Warfield SK, Westin CF, Guttmann CRG, Albert M, Jolesz FA, Kikinis R. Fractional Segmentation of White Matter. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 62–71. View abstract
  303. Ferrant M, Warfield SK, Guttmann CRG, Mulkern RV, Jolesz FA, Kikinis R. 3D Image Matching Using a Finite Element Based Elastic Deformation Model. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 202–209. View abstract
  304. Warfield SK, Robatino A, Dengler J, Jolesz FA, Kikinis R. Nonlinear Registration and Template Driven Segmentation. Toga AW, editor. Brain Warping. 1999; 67-84. View abstract
  305. Mulkern RV, Winalski C, Zengingonul HP, Warfield S, Holtzman D. Proton Magnetic Resonance Imaging of Exercised Muscle. Pandolf KB, Takeda N, Singal PK. Adaptation Biology and Medicine. 1999; 170-185. View abstract
  306. Warfield, SK Jolesz, FA Kikinis, R. A High Performance Computing Approach to the Registration of Medical Imaging Data. Parallel Computing. 1998; 24(9-10):1345-1368. View abstract
  307. Hüppi PS, Warfield S, Kikinis R, Barnes PD, Zientara GP, Jolesz FA, Tsuji MK, Volpe JJ. Quantitative magnetic resonance imaging of brain development in premature and mature newborns. Ann Neurol. 1998 Feb; 43(2):224-35. View abstract
  308. Warfield SK, Jolesz FA, Kikinis R. Real-Time Image Segmentation for Image-Guided Surgery. SC 1998: High Performance Networking and Computing Conference. 1998; 1–14. View abstract
  309. Westin CF, Warfield SK, Bhalerao A, Mui L, Richolt J, Kikinis R. Tensor controlled local structure enhancement of CT images for bone segmentation. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 1205–1212. View abstract
  310. Warfield SK, Kaus M, Jolesz FA, Kikinis R. Adaptive Template Moderated Spatially Varying Statistical Classification. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 231–238. View abstract
  311. Hata N, Dohi T, Warfield SK, Wells III W, Kikinis R, Jolesz FA. Multimodality Deformable Registration of Pre- and Intraoperative Images for MRI-Guided Brain Surgery. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 1067–1074. View abstract
  312. Iosifescu DV, Shenton ME, Warfield SK, Kikinis R, Dengler J, Jolesz FA, McCarley RW. An automated registration algorithm for measuring MRI subcortical brain structures. Neuroimage. 1997 Jul; 6(1):13-25. View abstract
  313. Warfield SK. Segmentation of Magnetic Resonance Images of the Brain. 1997. View abstract
  314. Warfield, S. Fast k-NN Classification for Multichannel Image Data. Pattern Recognition Letters. 1996; 17(7):713-721. View abstract
  315. Warfield S, Dengler J, Zaers J, Guttmann CR, Wells WM, Ettinger GJ, Hiller J, Kikinis R. Automatic identification of gray matter structures from MRI to improve the segmentation of white matter lesions. J Image Guid Surg. 1995; 1(6):326-38. View abstract
  316. Warfield S, Dengler J, Zaers J, Guttmann CR, Wells III WM, Ettinger GJ, Hiller J, Kikinis R. Automatic identification of Grey Matter Structures from MRI to Improve the Segmentation of White Matter Lesions. MRCAS’95 Second International Symposium on Medical Robotics and Computer Assisted Surgery. 1995; 140–147. View abstract
  317. Warfield S, Sachdev P, Aniss A, Hiller J. Validation of Automatic Classification Strategies for the Measurement of Subcortical Hyperintensities on T-weighted Magnetic Resonance Images. S/CAR 94 Symposium for Computer Assisted Radiology. 1994; 319–324. View abstract
  318. Hiller J, Zrimec T, Mankovich NJ, Warfield S. Visualising Cerebral Vasculature: Imaging Limitations from 2D and 3D Data. SPIE Medical Imaging 1994. Image Capture, Formatting and Display. 1994; 2164:74–82. View abstract