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What's New? -- in GEDI v2.1
1. Gene Plot for static (non-time course) sample analysis.
The bar chart will display the centroid value of each sample. Highlighting
of selected sample in "GEDI maps" and "Gene Expression Plot" are linked. When clicking on a gene, a solid line will be drawn on the bars to indicating the value for that particular gene within a minicluster.
2. Selectively display a subset of GEDI Maps.
3. Calculation of Mean and Difference for selected GEDI Maps in the static sample analysis.
4. Use Pearson’s correlation as a similarity metric, in addition to Euclidian distance.
5. Filter genes and reanalyze a subset of genes.
User can analyze only subset of the dataset by either using the selected genes only or excluding the selected genes.
6. Save settings when saving GEDI Session.
When loading a session saved by GEDI 2.1, the saved settings will also be loaded into GEDI.
7. Extensive export options to facilitate presentation and publication of results. ( Also export SOM centroid values, GEDI Map gene density values, Gene assignment lists.)
8. Other new convenient features:
Remembers the last visited analysis, folder location after open or read a file.
Diamond cursor on the Maps for viewing information on the tile without selecting.
Keyboard control by arrow keys to move diamond cursor.
Keyboard control by Space key to select or de-select tile.
We would like to hear from you! Please send function suggestions and bugs reports to us at
GEDI@childrens.harvard.edu.
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