- The Heart Transplant Program - Children's doctors have performed more than 160 transplants since its inception since 1986.
- The Intestine & Multivisceral Transplant Program - Performed the first successful multivisceral transplant in New England and the world's smallest successful multivisceral transplant in a 7 lb. baby
- The Kidney Transplant Program - Participates in more active NIH-sponsored pediatric kidney transplant research protocols than any other program in the nation
- The Liver Transplant Program - Offers expertise in whole liver, reduced-sized liver, split-liver and living donor transplants
- The Lung Transplant Program - Conducts intensive research on cystic fibrosis and immunology
- The Stem Cell Transplant Program - One of the oldest and largest programs of its kind, with more than 1,100 transplants performed for children and adolescents with complex cancers since the 1970s
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